Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
kmitcham created a comment on an issue on bioio-devs/bioio
ome-zarr-py requires requires-python = ">3.10" as of 0.10.3. (discovered while looking into this issue)
kmitcham closed an issue on bioio-devs/bioio
Bioio dump plugins is picking up uninstalled plugins
Sometimes after uninstalling a plugin, the plugin still shows up in the plugin_feasibility_report / dump_plugins. I think some of this is due to running `bioio.plugin_feasibility_report` from a plu...
kmitcham created a comment on an issue on bioio-devs/bioio
I did a fresh install of bioio on my macbook, and failed to repro the problem. (bioio) ~/projects/bioio:bugfix/84-ghost-plugins$ python Python 3.10.11 (main, Jan 17 2025, 14:42:07) [Clang 16.0.0 (c...
kmitcham created a comment on an issue on bioio-devs/bioio
This issue seems like it was resolved in https://github.com/thewtex/ngff-zarr/releases/tag/v0.10.1 The only version that would be a problem is EXACTLY v0.10.0, which is neither the min nor the l...
kmitcham closed an issue on bioio-devs/bioio
`ngff-zarr==0.10.0` breaks bioio
### Describe the Bug `ngff-zarr` released an update to [0.10.0 two days ago](https://github.com/thewtex/ngff-zarr/releases/tag/v0.10.0). In [PR#109](https://github.com/thewtex/ngff-zarr/pull/1...
kmitcham closed a pull request on kmitcham/tribes
Bump semver from 6.3.0 to 6.3.1
Bumps [semver](https://github.com/npm/node-semver) from 6.3.0 to 6.3.1. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/npm/node-semver/releases">semver's...
kmitcham pushed 2 commits to main kmitcham/tribes
kmitcham closed a pull request on kmitcham/tribes
Bump tough-cookie from 4.0.0 to 4.1.3
Bumps [tough-cookie](https://github.com/salesforce/tough-cookie) from 4.0.0 to 4.1.3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/salesforce/tough-coo...
kmitcham pushed 2 commits to main kmitcham/tribes
kmitcham closed a pull request on kmitcham/tribes
Bump word-wrap from 1.2.3 to 1.2.5
Bumps [word-wrap](https://github.com/jonschlinkert/word-wrap) from 1.2.3 to 1.2.5. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jonschlinkert/word-wrap...
kmitcham closed a pull request on kmitcham/tribes
Bump @babel/traverse from 7.16.0 to 7.23.2
Bumps [@babel/traverse](https://github.com/babel/babel/tree/HEAD/packages/babel-traverse) from 7.16.0 to 7.23.2. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://gith...
kmitcham created a comment on an issue on bioio-devs/bioio
The problem is not reproducing for me: `(bioio) kevin.mitcham@ip-10-141-0-41:~/projects/bioio-ome-zarr$ pip list | grep bio bioio 1.1.1.dev9+gabbab2c /home/kev...
kmitcham closed an issue on bioio-devs/bioio-tifffile
is_mmstack is required but tifffile dependency is older
### Describe the Bug this plugin uses tifffile's is_mmstack parameter but that parameter was only added after our minimum tifffile dependency requirement ### Expected Behavior consistenc...
kmitcham pushed 5 commits to main bioio-devs/bioio-tifffile
- earliest release version that passes tests f4a0497
- Update tifffile version update min version to what is required for tests to pass 74d7897
- zarr 3+ causes the tests to have type errors ac68a5f
- Merge branch 'bugfix/22-tifffile-dependency' of github.com:bioio-devs/bioio-tifffile into bugfix/22-tifffile-dependency 3d67928
- Merge pull request #26 from bioio-devs/bugfix/22-tifffile-dependency Update tifffile version 423dcc7
kmitcham closed a pull request on bioio-devs/bioio-tifffile
Update tifffile version
update min version to what is required for tests to pass ### Link to Relevant Issue This pull request resolves #22 https://github.com/bioio-devs/bioio-tifffile/issues/22 ### Description ...
kmitcham created a comment on an issue on bioio-devs/bioio
My suspicion is that you get readers that are installed, and the reader whose directory you are in if you are at the right level of reader directory. My work will start there.
kmitcham created a comment on a pull request on AllenInstitute/biofile-finder
> Philip brought up that we could derive from the Cloud path as well which would be much simpler. I opted against this idea since the cloud path is already derived from fms-ID. Open to a discussion...
kmitcham pushed 3 commits to bugfix/22-tifffile-dependency bioio-devs/bioio-tifffile
kmitcham created a review comment on a pull request on AllenInstitute/biofile-finder
Is supposed to be a date, or a datetime? I thought I saw something about 'bucketing' these values, and it seems like the precision of a datetime is overkill, and a date would be fine. I suppose t...
kmitcham opened a pull request on bioio-devs/bioio-tifffile
Update tifffile version
update min version to what is required for tests to pass ### Link to Relevant Issue This pull request resolves #22 https://github.com/bioio-devs/bioio-tifffile/issues/22 ### Description ...
kmitcham pushed 1 commit to bugfix/22-tifffile-dependency bioio-devs/bioio-tifffile
- Update tifffile version update min version to what is required for tests to pass 74d7897
kmitcham created a branch on bioio-devs/bioio-tifffile
bugfix/22-tifffile-dependency - A BioIO reader plugin for reading TIFFs using Tifffile
kmitcham created a comment on an issue on aics-int/aics-file-upload-app
I think the banner should only show up outside of production. "You are NOT uploading to production. To uploade to production, go to File-Select Environment and choose "Production"