Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
kmitcham opened a pull request on bioio-devs/bioio
restict ngff-zarr to prevent errors in Ubuntu 18
### Link to Relevant Issue Chantelle was encountering issues with bioio writer imports when using latest versions of bio. We eventually traced the issue to Ubuntu 18 having issues with ngff-zarr>...
kmitcham pushed 1 commit to bugfix/dependency-issues bioio-devs/bioio
- restict ngff-zarr to prevent errors in Ubuntu 18 02113e1
kmitcham created a branch on bioio-devs/bioio
bugfix/dependency-issues - Image reading, metadata management, and image writing for Microscopy images in Python
kmitcham created a comment on an issue on AllenInstitute/biofile-finder
Max is also having this problem
kmitcham created a review on a pull request on aics-int/aics-file-upload-app
Nothing looked crazy. I do have a slight concern about taking away the 'upload a directory' thing.
kmitcham created a review comment on a pull request on aics-int/aics-file-upload-app
like Phillip mentioned earlier, maybe swap 'ome.tiff' or 'czi' for jpeg.
kmitcham created a comment on a pull request on aics-int/aics-file-upload-app
FWIW I just talked to Max and he was doing some uploads by drag-n-dropping folders.
kmitcham opened an issue on AllenInstitute/biofile-finder
BFF fails to open file in Zen
Sara was working with BFF, and tried to send a file to Zen. Zen started up, but did not view the file. She was able to open the file from Zen by manually selecting it based on the displayed BFF fi...
kmitcham created a review on a pull request on allen-cell-animated/vole-app
Everything that isn't spaces, ordering or removing " seems like a simple rename.
kmitcham created a review comment on a pull request on allen-cell-animated/vole-app
So just some re-ordering here?
kmitcham created a comment on an issue on bioio-devs/bioio
ome-zarr-py requires requires-python = ">3.10" as of 0.10.3. (discovered while looking into this issue)
kmitcham closed an issue on bioio-devs/bioio
Bioio dump plugins is picking up uninstalled plugins
Sometimes after uninstalling a plugin, the plugin still shows up in the plugin_feasibility_report / dump_plugins. I think some of this is due to running `bioio.plugin_feasibility_report` from a plu...
kmitcham created a comment on an issue on bioio-devs/bioio
I did a fresh install of bioio on my macbook, and failed to repro the problem. (bioio) ~/projects/bioio:bugfix/84-ghost-plugins$ python Python 3.10.11 (main, Jan 17 2025, 14:42:07) [Clang 16.0.0 (c...
kmitcham created a comment on an issue on bioio-devs/bioio
This issue seems like it was resolved in https://github.com/thewtex/ngff-zarr/releases/tag/v0.10.1 The only version that would be a problem is EXACTLY v0.10.0, which is neither the min nor the l...
kmitcham closed an issue on bioio-devs/bioio
`ngff-zarr==0.10.0` breaks bioio
### Describe the Bug `ngff-zarr` released an update to [0.10.0 two days ago](https://github.com/thewtex/ngff-zarr/releases/tag/v0.10.0). In [PR#109](https://github.com/thewtex/ngff-zarr/pull/1...
kmitcham closed a pull request on kmitcham/tribes
Bump semver from 6.3.0 to 6.3.1
Bumps [semver](https://github.com/npm/node-semver) from 6.3.0 to 6.3.1. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/npm/node-semver/releases">semver's...
kmitcham pushed 2 commits to main kmitcham/tribes
kmitcham closed a pull request on kmitcham/tribes
Bump tough-cookie from 4.0.0 to 4.1.3
Bumps [tough-cookie](https://github.com/salesforce/tough-cookie) from 4.0.0 to 4.1.3. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/salesforce/tough-coo...
kmitcham pushed 2 commits to main kmitcham/tribes
kmitcham closed a pull request on kmitcham/tribes
Bump word-wrap from 1.2.3 to 1.2.5
Bumps [word-wrap](https://github.com/jonschlinkert/word-wrap) from 1.2.3 to 1.2.5. <details> <summary>Release notes</summary> <p><em>Sourced from <a href="https://github.com/jonschlinkert/word-wrap...