Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
gernophil created a comment on an issue on microsoft/vscode
Just to bring up sth. positive here :). I really like that bug and I use it almost daily.
gernophil created a comment on an issue on posit-dev/py-shiny
Just to come back to you: simply adding ``` Header add Set-Cookie "ROUTEID=.%{BALANCER_WORKER_ROUTE}e; path=/" env=BALANCER_ROUTE_CHANGED ``` with the sticky session config worked :). Thanks for li...
gernophil created a comment on an issue on posit-dev/py-shiny
Thanks for the link. I'll try that later. I guess this is the line you are referring to: ``` Header add Set-Cookie "ROUTEID=.%{BALANCER_WORKER_ROUTE}e; path=/" env=BALANCER_ROUTE_CHANGED ``` And pr...
gernophil created a comment on an issue on posit-dev/py-shiny
Just found my config, since I posted it on stackoverflow :). This is it: ``` <VirtualHost *:443> <Proxy balancer://myclusterhttp> BalancerMember http://127.0.0.1:8080 BalancerMember http://...
gernophil created a comment on an issue on posit-dev/py-shiny
Yes, I am. I also tried with sticky sessions, but that didn't help. Maybe I am balancing wrong somehow. I can show you my config as soon as I am back on the computer.
gernophil created a comment on an issue on posit-dev/py-shiny
This bug is open for quite some time now and still seems untreated. I am seeing the same error when I run my app on a remote server (behind an apache2 sever). If I try to upload the first time, I ...
gernophil created a comment on an issue on igvteam/igv.js
Ok, first let's go back to the screenshots: Both screenshots show two instances of igvjs. The upper one is created using the HTML code from `igvjs_minimal_locus.html` the lower one is created usin...
gernophil created a comment on an issue on igvteam/igv.js
No need to debug the app, I just use this as workaround to start a webserver since JavaScript doesn't load local files. Just wanted to make it easy. You would just need to put the three files in a ...
gernophil created a comment on an issue on igvteam/igv.js
Here are some screenshots: directly after starting the app:  and after ma...
gernophil created a comment on an issue on igvteam/igv.js
It seems to depend on the starting locus. Not sure, if you are familiar with shiny, but that's the context I use. I made a little script showing this. Just put the app.py and the two html files in ...
gernophil created a comment on an issue on igvteam/igv.js
I'l send one tomorrow (it's midnight here right now :D)
gernophil created a comment on an issue on igvteam/igv.js
Hmm it's the official Ensembl file. Maybe I'll try indexing without sorting, but I think sorting is necessary for indexing.
gernophil created a comment on an issue on igvteam/igv.js
Thanks for the info. Guess the easiest would then maybe be to simply filter the GTF file to only contain what I want to see :). Btw. I am experiencing a little inconsistent behavior with the load...
gernophil opened an issue on igvteam/igv.js
Use filterTypes for GTF files
According to the docs (and what I've tried) this is only available for GFF3s. Unfortunately, I have to use a GTF file. Would be great, if this could be implemented. Alternatively, `colorBy` could a...
gernophil created a comment on an issue on posit-dev/py-shiny
Just wanted to ask, if there is any news to this?
gernophil created a comment on an issue on Ensembl/ensembl-vep
Sorry for the late reply, I adjusted my script so it now sends sorted variants to VEP, which also has the benefit of beeing a bit faster now :).
gernophil created a comment on an issue on igvteam/igv.js-docs
I am using [this GTF file](ftp://ftp.ensembl.org/pub/release-112/gtf/homo_sapiens/Homo_sapiens.GRCh38.112.gtf.gz) and I prepare it using these commands. Since "normal" IGV seems to have trouble wit...
gernophil created a comment on an issue on igvteam/igv.js-docs
Thanks for the swift reply. Will do tomorrow. My computer is already switched off :).
gernophil opened an issue on igvteam/igv.js-docs
Use filterTypes for GTF files
According to the docs (and what I've tried) this is only available for GFF3s. Unfortunately, I have to use a GTF file. Would be great, if this could be implemented. Alternatively, `colorBy` could a...
gernophil created a comment on an issue on kaixxx/noScribe
Can't we just autodownload the most recent version on the first start and regularly check for updates? I would simply store it in the config folder (like the yaml file). I wouldn't use the system's...
gernophil created a comment on an issue on kaixxx/noScribe
Do we really bundle all binaries for every OS?
gernophil created a comment on an issue on rstudio/shiny-server
Are you planing to include support for conda envs in the future similar like the support of venv? That would be great, if I could simply tell `shiny-server`, which conda env to use for what app.
gernophil created a comment on an issue on EGA-archive/ega-download-client
Any news here? I am trying to re-download a data set with the same script, but now I always get `'ConnectionResetError(104, 'Connection reset by peer')'` and `ResponseError('too many 500 error resp...
gernophil created a comment on an issue on kaixxx/noScribe
I wonder, if it might be worth decoupling the two processes (diarize and whisper) completely from the GUI and run them as subprocess to save resources?
gernophil created a comment on an issue on snakemake/snakemake
I am still confused: The [Snakemake docs](https://snakemake.readthedocs.io/en/stable/executing/cli.html#snakemake.cli-get_argument_parser-conda) say: > `--use-conda` > If defined in the rule,...
gernophil created a comment on an issue on kaixxx/noScribe
I fail to see the change in `diarize.py`. I put your code into backticks, so we can see the intendation: \`\`\` ``` code ``` \`\`\`
gernophil created a comment on an issue on kaixxx/noScribe
I know this is about the focus (so maybe more about the old thread), but this might still be relevant: https://answers.microsoft.com/en-us/windows/forum/all/application-focus-having-a-significant-...
gernophil opened an issue on Ensembl/ensembl-vep
VEP needs sorted VCFs again
Hey, this bug has been described here ealier: https://github.com/Ensembl/ensembl-vep/issues/530 For larger inputs in VCF format VEP 113 (used with cache version 112) crashes with `Exiting the pr...