Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
pgarrison reopened a pull request on AllenCellModeling/cyto-dl
admin/requirements-update_2024-10-11_19-33
Updating lock files and requirements
pgarrison closed a pull request on AllenCellModeling/cyto-dl
admin/requirements-update_2024-10-11_19-33
Updating lock files and requirements
pgarrison opened a pull request on aics-int/aics-file-upload-app
Bugfix/128 cloud only upload crash
# Purpose Allow cloud-only uploads to have their metadata edited Closes #128 # Changes Use `fms.file.publicfilepath` instead of `fms.file.localfilepath`. The error that was triggered is on...
pgarrison pushed 2 commits to bugfix/128-cloud-only-upload-crash aics-int/aics-file-upload-app
pgarrison created a comment on a pull request on aics-int/aics-file-upload-app
I think there's also a minor UI issue here, shown in my [screenshot above](https://github.com/aics-int/aics-file-upload-app/pull/127#pullrequestreview-2579668498): the ~4 vertical gray lines on the...
pgarrison created a comment on an issue on aics-int/aics-file-upload-app
Exception is thrown from the `basename` call [here](https://github.com/aics-int/aics-file-upload-app/blob/main/src/renderer/state/upload/selectors.ts#L481)
pgarrison created a review on a pull request on aics-int/aics-file-upload-app
There are too many changes in this PR to review carefully. I encourage dividing big changes like this up into multiple PRs in the future. I did read through the `UploadSelectionPage` code, howev...
pgarrison created a review on a pull request on aics-int/aics-file-upload-app
There are too many changes in this PR to review carefully. I encourage dividing big changes like this up into multiple PRs in the future. I did read through the `UploadSelectionPage` code, howev...
pgarrison created a review on a pull request on aics-int/aics-file-upload-app
There are too many changes in this PR to review carefully. I encourage dividing big changes like this up into multiple PRs in the future. I did read through the `UploadSelectionPage` code, howev...
pgarrison created a comment on an issue on aics-int/aics-file-upload-app
Failed to reproduce on a Vast-and-cloud upload
pgarrison created a comment on a pull request on aics-int/aics-file-upload-app
This looks so much nicer and the interface is so much better! Great job @TravisKroeker and @tyler-foster!
pgarrison created a comment on an issue on aics-int/aics-file-upload-app
Reproduced on staging by doing a cloud-only upload with metadata.
pgarrison closed an issue on AllenCell/EMT_data_analysis
Incorrect manifest for Nuclei_localization.py
When I run `Nuclei_localization.py` I get the following error. ```python bioio_base.exceptions.UnsupportedFileFormatError: BioImage does not support the image: 'https://allencell.s3.amazonaws.com...
pgarrison created a comment on an issue on aics-int/aics-file-upload-app
This bug does not happen for all uploads. I suspect it is related to cloud-only uploads. Ask Chantelle for examples.
pgarrison opened an issue on aics-int/aics-file-upload-app
BUG: FUA crashes when attempting to edit metadata
# Steps to reproduce * Open FUA to main page * Select a file (our test file has metadata already and is a cloud-only upload) * Right click the file and select View * Actual behavior: application go...
pgarrison pushed 1 commit to feature/derive_local_path AllenInstitute/biofile-finder
- Fix up local path mount point test e41c9bf
pgarrison created a comment on an issue on AllenInstitute/biofile-finder
This also affects bff.allencell.org <img width="1426" alt="Screenshot 2025-01-09 at 3 46 46 PM" src="https://github.com/user-attachments/assets/68ad14c9-e272-4a66-81f0-cc33d6395241" />
pgarrison closed an issue on AllenInstitute/biofile-finder
Copy to Vast: status indicator
# User story Scientists 1 and 2 are working on a project that needs to use file A on local storage, but File A is only on the cloud. Scientist 1 uses BFF to copy the file to the Vast. The file is 4...
pgarrison pushed 4 commits to main AllenInstitute/biofile-finder
- Test for Copying to Vast in progress… text 9e4d9fb
- 356 Display 'Copying to VAST in progress' for Local file path d72249d
- 356 Use italics for 'Copying to VAST in progress' a64aeb5
- Merge pull request #388 from AllenInstitute/feature/356-copy-to-vast-status-indicator 356: Copy to VAST status indic... 89df078
pgarrison closed a pull request on AllenInstitute/biofile-finder
356: Copy to VAST status indicator
# Purpose Scientists 1 and 2 are working on a project that needs to use file A on local storage, but File A is only on the cloud. Scientist 1 uses BFF to copy the file to the Vast. The file is 4TB...
pgarrison created a review comment on a pull request on AllenInstitute/biofile-finder
> If this is a boolean, it should be possible to pass as just fmsStateIndicator without ={fmsStateIndicator} The following are equivalent: ```jsx <FileAnnotationRow fmsStateIndicator /> <FileAn...
pgarrison created a comment on an issue on AllenInstitute/biofile-finder
This annotation is used by BFF as of #388, so it still needs to be read. I think this is lower priority than the metadata editing feature.
pgarrison created a review comment on a pull request on AllenInstitute/biofile-finder
This conditional was moved from line 74 because `annotation.extractFromFile(fileDetails);` returns MISSING_VALUE for the local file path annotation when the download is in progress (because there i...
pgarrison pushed 1 commit to feature/356-copy-to-vast-status-indicator AllenInstitute/biofile-finder
- 356 Use italics for 'Copying to VAST in progress' a64aeb5
pgarrison opened a draft pull request on AllenInstitute/biofile-finder
356: Copy to VAST status indicator
# Purpose Scientists 1 and 2 are working on a project that needs to use file A on local storage, but File A is only on the cloud. Scientist 1 uses BFF to copy the file to the Vast. The file is 4TB...
pgarrison created a branch on AllenInstitute/biofile-finder
feature/356-copy-to-vast-status-indicator - An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.