Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
pgarrison pushed 1 commit to analysis-command-tables AllenCell/benchmarking_representations
- npm1 and other_polymorphic use Rotation_invariant_pointcloud_SDF 5b7daed
pgarrison created a review comment on a pull request on AllenCell/benchmarking_representations
[ab7f60d](https://github.com/AllenCell/benchmarking_representations/pull/70/commits/ab7f60d508ec8572b78c68ce77cb35c6c5f66b12)
pgarrison created a review comment on a pull request on AllenCell/benchmarking_representations
Resolved in [ab7f60d](https://github.com/AllenCell/benchmarking_representations/pull/70/commits/ab7f60d508ec8572b78c68ce77cb35c6c5f66b12)
pgarrison pushed 1 commit to analysis-command-tables AllenCell/benchmarking_representations
- cellpack and pcna use Rotation_invariant_pointcloud_jitter ab7f60d
pgarrison created a review comment on a pull request on AllenCell/benchmarking_representations
[a403119](https://github.com/AllenCell/benchmarking_representations/pull/70/commits/a403119658b2cb6c7a420aa1ba179d51742dc29e)
pgarrison created a review comment on a pull request on AllenCell/benchmarking_representations
Addressed in [a403119](https://github.com/AllenCell/benchmarking_representations/pull/70/commits/a403119658b2cb6c7a420aa1ba179d51742dc29e)
pgarrison pushed 1 commit to analysis-command-tables AllenCell/benchmarking_representations
- npm1_perturb uses run_drugdata_analysis, not run_features and run_analysis a403119
pgarrison opened a pull request on AllenCell/benchmarking_representations
Document OpenGL requirement (version unknown)
Preprocessing code requires that the user have OpenGL installed, so we should document it. I listed the OpenGL version used on our A100s. Closes #50
pgarrison pushed 1 commit to 50-opengl-dependency AllenCell/benchmarking_representations
- Specify OpenGL version ec62d47
pgarrison pushed 1 commit to 50-opengl-dependency AllenCell/benchmarking_representations
- Document OpenGL requirement (version unknown) 5c04a53
pgarrison created a comment on an issue on AllenCell/benchmarking_representations
The "Only use with A100s" comment came from cyto-dl
pgarrison created a comment on an issue on AllenCell/benchmarking_representations
We're not going to publish these as notebooks.
pgarrison closed an issue on AllenCell/benchmarking_representations
More detailed jupyter notebook instructions
Give a little more information about how to run a jupyter notebook: * Link to jupyter installation instructions * Describe how to connect jupyter to the virtual environment created in the opening...
pgarrison created a branch on AllenCell/benchmarking_representations
50-opengl-dependency - Benchmarking different methods for extracting unsupervised representations from images
pgarrison opened a pull request on AllenCell/benchmarking_representations
Add tables of analysis commands for every dataset
# Purpose Follow-up on @ritvikvasan's [comment](https://github.com/AllenCell/benchmarking_representations/pull/61#discussion_r1859257180) in #61 that we could use the same table format for `run_fe...
pgarrison created a branch on AllenCell/benchmarking_representations
analysis-command-tables - Benchmarking different methods for extracting unsupervised representations from images
pgarrison created a comment on an issue on bioio-devs/bioio
I failed to reproduce the original error. I was able to successfully install the latest `bioio` on our SLURM cluster (Ubuntu 18.04.4) using the following `pyproject.toml`. ```toml [project] ...
pgarrison created a comment on an issue on AllenCell/benchmarking_representations
Closing because I think this is captured in #48
pgarrison closed an issue on AllenCell/benchmarking_representations
test using joblib
create instructions to use these too!
pgarrison created a comment on an issue on AllenCell/benchmarking_representations
Example of this A100-only section: https://github.com/AllenCell/benchmarking_representations/blob/main/configs/experiment/npm1/image_sdf_classical.yaml#L50 @ritvikvasan Is this extras section en...
pgarrison created a comment on a pull request on AllenCell/nuc-morph-analysis
> @pgarrison I have struggled to figure out how to fix the `mypy` errors here. Any idea what's going on? Any help you can give to get this moving along would be really appreciated! > > ``` > nu...
pgarrison created a review comment on a pull request on AllenCell/nuc-morph-analysis
This was going to make a path like `save_dir / save_dir / f"S10_D-volume_dips_over_time_all_colonies-{ycol}-{threshold}"` so I removed one of the duplicate `save_dir`s.
pgarrison pushed 3 commits to main AllenCell/benchmarking_representations