Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
mslarae13 closed an issue on microbiomedata/issues
The DataHarmonizer in the Submission Portal should support loading JSON data and dumping JSON data
DataHarmonizer's JSON format is almost totally compatible with the data serialization expected by LinkML tools. See exception below. The NMDC Submission Portal should support trafficking in JSON...
mslarae13 created a comment on an issue on microbiomedata/issues
@ssarrafan we've decided to take an inventory of projects, data, staff, and protocols to figure out which study should be the 1st priority. These can be removed from sprints until this is done, we'...
mslarae13 closed an issue on microbiomedata/issues
Update FAIR documentation for renewal
https://nmdc-documentation.readthedocs.io/en/latest/explanation/fair_data.html - [ ] Update to no longer refer to the pilot - [ ] Add FAIRness evaluation? https://github.com/microbiomedata/...
mslarae13 pushed 3 commits to main microbiomedata/docs
mslarae13 pushed 107 commits to 46-update-fair-documentation-for-renewal microbiomedata/docs
- Update portal_guide.md Removed the word pilot and changed the last sentence in the first paragraph. b3be445
- add metag wrapper doc and figures 6d0ca04
- update figure location 4bc6755
- update test data links and from comments fb78980
- Discourage search engines from indexing website e94afc3
- Display "in development" banner throughout website 1fa8732
- Merge pull request #50 from microbiomedata/49-add-banner-to-new-docs-landing-page-to-show-that-its-under-development ... af2ff6f
- Wrap injectable JavaScript snippet in `<script></script>` HTML tags f6763e2
- Refine banner appearance across the various sub-site themes 3d277c8
- Make banner only appear on homepage of entire website In the previous commit, I made it appear on the homepages of a... 505803d
- update inputs 76cac8e
- Build consolidated workflow documentation Sphinx website via Dockerfile 82afcea
- Fix typos inherited from `workflow_documentation` repo d02f700
- Extract cloning and arranging-into-chapters steps into a shell script dd2aabf
- Use Python 3.12 base image (to match GHA workflows) 30eb110
- Update GHA workflow to build and include multi-chapter workflow docs 0386f9f
- Store source files under `/tmp` to avoid permission issues on GHA 3b4b9dc
- Refrain from reusing cached image layers when building image 6a7dba2
- Sync `overview.rst` with upstream repo 0fe0c53
- Update index.rst e3c90d5
- and 87 more ...
mslarae13 created a comment on a pull request on microbiomedata/docs
Will merge in the changes I've made, and @cmungall will make a new PR with additional changes
mslarae13 created a comment on an issue on microbiomedata/issues
Tested via the API submission summary endpoint. I delete a submission and it was in fact deleted! Good work James!
mslarae13 closed an issue on microbiomedata/issues
Add “delete this submission” button to NMDC submission portal
Allow anyone with contributor roles (PI or submitter) to delete a submission Allow NMDC admins to delete a submission. - I expect people will forget about their test/ workshop submissions & to ...
mslarae13 created a comment on an issue on GenomicsStandardsConsortium/mixs
Sent a followup email today. Term will be deprecated in January.
mslarae13 created a comment on an issue on microbiomedata/metadata-for-user-facility-template-transformations
@Natalie-Winans any update on this?
mslarae13 created a comment on an issue on microbiomedata/issues
I missed this one. I'll get the email draft written and sent to Emiley by Monday
mslarae13 created a comment on an issue on microbiomedata/issues
I sent an updated / final email to @emileyfadrosh on Dec 6th. Not sure if it got sent to the PI?
mslarae13 created a comment on an issue on microbiomedata/issues
I sent the draft to @emileyfadrosh on Nov 25th @emileyfadrosh did this get sent to the PI?
mslarae13 created a comment on an issue on microbiomedata/issues
Sent on Nov 19th by @emileyfadrosh Any response, Emiley?
mslarae13 created a comment on an issue on microbiomedata/enviroMS
Ancient... and probably could be considered OBE. I'll close it. a new isue should be made when this work starts.
mslarae13 opened an issue on microbiomedata/issues
`samp_name` should be unique across environmental extensions within a submission
This is a result of https://github.com/microbiomedata/nmdc-server/issues/1367 samp_name only needs to be unique within an environment, resulting in potential repeat samp_name when similar data typ...
mslarae13 created a comment on a pull request on microbiomedata/submission-schema
I believe this is getting moved out of submission-schema and into a different repo. I'll review when the new PR is opened
mslarae13 created a comment on an issue on microbiomedata/nmdc-server
Looks good! @pkalita-lbl did you make an issue to make sure sample names were unique across sample types?
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
Looks to be working well!!
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
IF IT’S ON DEV NOW IT WILL BE PART OF THE NEXT RELEASE ALWAYS AND FOR EVERY CHANGE :) Missed the last release. Will be in production with the next release.
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
@eecavanna any idea when this will be in production? With the next release?
mslarae13 opened an issue on microbiomedata/issues
Update FAIR documentation for renewal
https://nmdc-documentation.readthedocs.io/en/latest/explanation/fair_data.html - [ ] Update to no longer refer to the pilot - [ ] Add FAIRness evaluation? https://github.com/microbiomedata/...
mslarae13 created a comment on an issue on GenomicsStandardsConsortium/mixs
linked to https://github.com/GenomicsStandardsConsortium/mixs/issues/128
mslarae13 opened an issue on GenomicsStandardsConsortium/mixs
unclear on difference between `host_taxid` & `specific_host`
`host_taxid` https://genomicsstandardsconsortium.github.io/mixs/0000250/ Description: NCBI taxon id of the host, e.g. 9606 Name Description Checklist/Extension [PlantAssociated](https://genomi...
mslarae13 created a comment on an issue on GenomicsStandardsConsortium/mixs
Sent an email on Nov 26th
mslarae13 created a comment on an issue on microbiomedata/nmdc-runtime
@aclum when do you expect this template to be live? & do you think it's work making this change? or focusing on the API connection?
mslarae13 closed an issue on microbiomedata/nmdc_automation
Create test instance of each workflow that leaverage Berkeley schema & new runtime
Covers: <google-sheets-html-origin><!--td {border: 1px solid #cccccc;}br {mso-data-placement:same-cell;}--> G1 | All: Create test instance of each workflow that leaverage Berkeley schema & new ru...
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
> <img alt="Screenshot 2024-12-05 at 11 18 01 AM" width="240" src="https://private-user-images.githubusercontent.com/47541313/392963571-e6b30200-5c8a-45b4-95c7-e4792356105c.png?jwt=eyJhbGciOiJIUzI1...