Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
mslarae13 created a comment on an issue on microbiomedata/docs
@eecavanna I don't. Are we planning to leave that in wordpress? Or also provide / capture here?
mslarae13 created a comment on an issue on microbiomedata/docs
@eecavanna I also can't find a file for https://microbiomedata.org/introduction-to-metadata-and-ontologies/
mslarae13 created a comment on an issue on microbiomedata/docs
@eecavanna Think you can help me find the file that makes this page / text https://microbiomedata.org/metadata/
mslarae13 created a comment on an issue on microbiomedata/issues
Yes, NMDC relevant. Responded to submitter.
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
Hi @marySalvi clarification, should there be a new field in the submission portal? <img width="1002" alt="Screenshot 2024-11-24 at 1 36 53 PM" src="https://github.com/user-attachments/assets/...
mslarae13 created a comment on an issue on microbiomedata/docs
@ssarrafan I think I got them all... I think most of the updates needed here are pretty small. We just need to make sure it's eay to navigate.
mslarae13 created a comment on an issue on microbiomedata/submission-schema
@JamesTessmer I was probably supposed to test this out earlier, and forgot! I just tested it, and it looks good. One confirmation, when I check JGI , an award box appears.. when I check EMSL, a...
mslarae13 created a comment on an issue on microbiomedata/metadata-for-user-facility-template-transformations
@Natalie-Winans think you'll be able to start this next sprint? Nov 18th?
mslarae13 created a comment on an issue on microbiomedata/nmdc-schema
@cristina-stonepedraza I see the PR is in draft. Think this will be done by the 20th?
mslarae13 created a comment on an issue on microbiomedata/issues
If we update the help menu it's gonna update it for the whole interface. I don't think we can add a "This field is locked because you can only edit it on the soil tab" comment to just the JGI tab v...
mslarae13 created a comment on an issue on microbiomedata/nmdc-runtime
@aclum what is the "only create missing records" are there missing biosamples??? there shouldn't be :(
mslarae13 created a comment on an issue on microbiomedata/docs
yeah add it to the sprint. I did start this, but I will :)
mslarae13 created a comment on a pull request on microbiomedata/nmdc-server
> By the way, I do wonder whether we will restrict access to this reporting endpoint also. You/we can discuss that with @mslarae13. @eecavanna I assume the submission status end point that I use...
mslarae13 created a comment on an issue on microbiomedata/nmdc-server
@naglepuff Will the uncheck items be completed? Can we close this issue?
mslarae13 created a comment on an issue on microbiomedata/nmdc_automation
@mbthornton-lbl can we remove this from this squad board? It sounds like this task is being worked on but I'd like to close out the project board. Is this being tracked elsewhere? Or just not curr...
mslarae13 created a comment on an issue on microbiomedata/nmdc-schema
@eecavanna @turbomam Is there still effort to do this? I know there's been some documentation, and if we don't think we need this anymore, we can close as will not complete. (Trying to wrap up ...
mslarae13 created a comment on an issue on microbiomedata/nmdc-runtime
@dwinston @eecavanna Let me know if you'd like me to add anything :)
mslarae13 opened an issue on microbiomedata/nmdc-runtime
navigating documentation was a bit difficult
A user worked with us to add this study to NMDC: https://data.microbiomedata.org/?q=Ch4IABABGAMiFiJubWRjOnN0eS0xMS1lNHliOXo1OCI She recently emailed me asking - "I'm trying to show my student ...
mslarae13 created a comment on an issue on microbiomedata/nmdc-server
@naglepuff think we should still do this, considering what Mary is doing for 767?
mslarae13 created a comment on an issue on microbiomedata/metadata-for-user-facility-template-transformations
Note, the issues identify metag (jgi_mg) but the metat (jgi_mt) also needs updated.
mslarae13 created a comment on an issue on microbiomedata/nmdc-schema
branch: https://github.com/microbiomedata/nmdc-server/tree/2047-mixs-endpoint . PR: This will provide the file I need. Criteria for closing this issue: - Adding a TRUE/ FALSE column for if ...
mslarae13 created a comment on an issue on microbiomedata/issues
Done, and included in the evaluation
mslarae13 closed an issue on microbiomedata/issues
Evaluate envo classes used for existing data in NMDC & NCBI for SOIL
check existing env_medium, env_local_scale, and env_broad_scale terms for soil in NMDC and NCBI Compare this list to the list @turbomam curated (https://github.com/microbiomedata/issues/issues/843...
mslarae13 created a comment on an issue on microbiomedata/issues
Manual evaluation complete @sierra-moxon & @turbomam developed a notebook that captures the filtered envo terms and exports them to a .tsv that is then added to the schema Some manual curation and...
mslarae13 created a comment on an issue on microbiomedata/issues
Manual evaluation complete @sierra-moxon & @turbomam developed a notebook that captures the filtered envo terms and exports them to a .tsv that is then added to the schema
mslarae13 closed an issue on microbiomedata/issues
`env_medium` OAK Soil query vs manually curated terms
mslarae13 created a comment on an issue on microbiomedata/issues
@sierra-moxon & @turbomam developed a notebook that captures the filtered envo terms and exports them to a .tsv that is then added to the schema