Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
Unaimend closed an issue on Porthmeus/MeMoMe
Implement easy way to get unannotated/metabs without inchi
Because I'd like to play around with pubchem, I'd like to find out if there are lot of metabs that would be annotated by it :)
Unaimend opened a pull request on Porthmeus/MeMoMe
Thomas/dev/hmdb
This PR implements partial HMDN annotation (See #183 for things that still need to be done). But you can already observe an improvement by for the `test_ecoli_vmh_all` in the bulkPerformance anno...
Unaimend opened a pull request on Porthmeus/MeMoMe
Thomas/dev/annotation
Added more detailed annotation performance metrics. Specifically each model in the bulk performance now has a link as its name  AFAIK this is not fixed on master. VMH is not used :)
Unaimend created a branch on Porthmeus/MeMoMe
thomas/dev/hmdb - Metabolic Model Merging - a semiautomated way to merge genome scale metabolic models
Unaimend opened an issue on Porthmeus/MeMoMe
HMDB saves vmh id's as uppercase, such cases could happen in other dbs as well. We need to handle this
Unaimend opened an issue on Porthmeus/MeMoMe
Pandas sometimes converts purely numeric id row to float
...WTF {'accession': ['HMDB0000972'], 'name': ['10-Formyltetrahydrofolate'], 'synonyms': ['\n '], 'chemical_formula': ['C20H23N7O7'], 'iupac_name': ['(2S)-2-[(4-{N-[(4-hydroxy-2-imino-1,2,5,6,7,...
Unaimend opened an issue on Porthmeus/MeMoMe
Implement HMDB
- [ ] Add a link to config.yaml (This downloads a zip ~900M, we have to unpack this on the user site)
Unaimend pushed 1 commit to thomas/dev/annotation Porthmeus/MeMoMe
- Added more detailed stats to the annotation statistics f3248d5
Unaimend pushed 1 commit to thomas/dev/annotation Porthmeus/MeMoMe
- Added more detailed stats to the annotation statistics 171fb2f
Unaimend created a branch on Porthmeus/MeMoMe
thomas/dev/annotation - Metabolic Model Merging - a semiautomated way to merge genome scale metabolic models
Unaimend opened a pull request on Porthmeus/MeMoMe
Thomas/dev/suite
This changes our test architecture and does a little clean up of the test folder. * Using a python script and and a manual test suite allows us to split our tests into more granular packages. Thus...
Unaimend created a branch on Porthmeus/MeMoMe
thomas/dev/suite - Metabolic Model Merging - a semiautomated way to merge genome scale metabolic models
Unaimend opened a pull request on Porthmeus/MeMoMe
Dev/thomas/docker
This PR add a multi-stage dockerfile and a docker-compose file. This enables us to develop the application in a more reproducible way. Further, we expose a production stage, that currently just sta...
Unaimend opened an issue on Porthmeus/MeMoMe
Implement easy way to get unannotated/metabs without inchi
Because I'd like to play around with pubchem, I'd like to find out if there are lot of metabs that would be annotated by it :)
Unaimend created a comment on an issue on Porthmeus/MeMoMe
I did create a git hub package, but I currently can't link it to MeMoMe. I lack the permissions. Thus I also can't implement the Actions :)