Ecosyste.ms: Timeline

Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.

JoseBlanca

JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • plot diversity along the genome 59387bf

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • clarify which vars are used in the PCA 67b2704

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JoseBlanca pushed 3 commits to main JoseBlanca/pop_lab
  • update script to export web site 55d69c9
  • remove unused line 44085b5
  • If there is only one pop do not create pop switches 99f3703

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • bugfix for old more-itertools versions 2166d80

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JoseBlanca pushed 2 commits to main JoseBlanca/pop_lab
  • do not recalculate ld lowess curves when selecting times and pops adf7025
  • improved styling 78955ec

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • add POP_NAMES required variable ac1c056

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • add time and pop selectors to PCA plot 26f9a91

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • add times to plot switches to ld plot cda43f1

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JoseBlanca pushed 3 commits to main JoseBlanca/pynei
  • Variantas from_gt_array now admits vars_info 2c8a36a
  • filter out LD calculations less than a min dist 76de878
  • make get_ld_and_dist_for_pops public f3b2fa8

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JoseBlanca pushed 1 commit to main JoseBlanca/pop_lab
  • improve defaults for LD calculation 4e5a3a6

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JoseBlanca pushed 2 commits to main JoseBlanca/pop_lab
  • add statsmodels as requirement 57f341f
  • implement LD vs dists plot f298404

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • implement calc ld per population 67a8f4f

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • vars can be filtered using slices or masks 344071d

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • bugfix: use correct filter iter factory 6ff293e

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • add more-itertools as requirement d175bf8

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei

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JoseBlanca pushed 3 commits to main JoseBlanca/pop_lab
  • ignore update pynei dirs script 8a307f9
  • upgrade dependencies f08d9a4
  • filter SNPs before doing PCA 012baeb

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JoseBlanca pushed 2 commits to main JoseBlanca/pynei
  • chunkIterFactories need metadata, not peek first item 53983a7
  • implement getting metadata from filtered vars b40bbe3

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • bugfix: chrom, pos and dists in LDResults 9013caf

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • generate variantions for testing 76e7e68

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • implement calc LD for variations b29b542

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • calc LD r2 and check mafs before calculation 973c20c

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • implement rogers huff r calculation 938616b

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • implement to 012 array in genotypes faaac8b

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei

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JoseBlanca pushed 1 commit to main JoseBlanca/pynei
  • rename chunk iter factories 4884eba

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