Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
pkalita-lbl closed an issue on geneontology/gocam-py
"Synchronize" NDEx stylesheet with GO Pathway Viewer
From a recent discussion with @cmungall , we're interested in having the NDEx and Pathway Viewer visual representations match each other as we can. From the noctua workbenches call today, the cu...
pkalita-lbl pushed 3 commits to main geneontology/gocam-py
pkalita-lbl closed a pull request on geneontology/gocam-py
Sync CX2 styles with widget
Fixes #41 These changes update the style definitions in the CX2 translation package to be aligned with the pathway widget's style definitions.
pkalita-lbl pushed 2 commits to master geneontology/geneontology.github.io
pkalita-lbl closed a pull request on geneontology/geneontology.github.io
Add GO-CAM legend for NDEx asset
Part of https://github.com/geneontology/gocam-py/issues/41 This file is intentionally not being referenced by any pages on the site. The intention is just to have this file be available via a `g...
pkalita-lbl created a branch on geneontology/gocam-py
issue-41-sync-styles-with-widget - Draft data model for GO-CAMs
pkalita-lbl opened a pull request on geneontology/geneontology.github.io
Add GO-CAM legend for NDEx asset
Part of https://github.com/geneontology/gocam-py/issues/41 This file is intentionally not being referenced by any pages on the site. The intention is just to have this file be available via a `g...
pkalita-lbl created a branch on geneontology/geneontology.github.io
feat-add-ndex-gocam-legend-asset - Repository for storing GO documentation, directly available through the general GO site
pkalita-lbl created a review comment on a pull request on microbiomedata/nmdc-server
I think we generally don't quote these. ```suggestion studyDescription: 'The Study Description should provide a summary that includes the context of your study, research, goals, and design. W...
pkalita-lbl created a review comment on a pull request on microbiomedata/nmdc-server
Unfortunately Markdown is not supported here; gotta be HTML. ```suggestion fundingSources: 'The Funding Source of the research performed under this study should be provided and include an awa...
pkalita-lbl created a review comment on a pull request on microbiomedata/nmdc-server
```suggestion piEmail: 'The Principal Investigator\'s email is required for submission. The submitter does not have to be the Principal Investigator.', ```
pkalita-lbl created a review comment on a pull request on microbiomedata/nmdc-server
I'm not sure that the user needs to be reminded that they're on the Study Information page. ```suggestion studyName: 'A Study Name is required. We recommend the use of standardized, informati...
pkalita-lbl created a review on a pull request on microbiomedata/nmdc-server
Here's what your changes look like _in situ_, for your reference. See suggestions below. <img width="1182" alt="image" src="https://github.com/user-attachments/assets/4050d132-080b-447f-a320-883...
pkalita-lbl created a review on a pull request on microbiomedata/nmdc-server
Here's what your changes look like _in situ_, for your reference. See suggestions below. <img width="1182" alt="image" src="https://github.com/user-attachments/assets/4050d132-080b-447f-a320-883...
pkalita-lbl pushed 30 commits to issue-1383-metadata-suggestion-ui microbiomedata/nmdc-server
- Add initial button for test submission 6201594
- Finish test submission button and add supporting boolean 2f946f1
- Add supporting changes for creating test submission in back end DB dc4cfc1
- Adding isTestSubmission to index.ts 43fd012
- Move isTestSubmission to SubmissionMetadata schema, add migrator e3075d8
- Fix formatting 22db1c4
- Update front end support for test submission and remove ability to submit them e372535
- add tooltip explaining test submissions 9968fd2
- Merge branch 'main' into Add-test-submission-button Merge main back into feature branch 4011696
- update down version number in migrator 2a5f681
- remove debugging lines 340c9af
- Add check for isTestSubmission in harmonizer with debugging 2f63c4b
- remove bug fixing lines, correct naming of is_test_submission 790dcd5
- Fix formatting 742f81d
- Remove console printing 3b2dfbb
- Remove final submit button from dialog if test submission 313d345
- Merge pull request #1495 from microbiomedata/Add-test-submission-button Add initial button for test submission 38d1939
- Bump `nmdc-schema` to `11.3.0` and `submission-schema` to `11.3.0rc1` Note: `submission-schema` version `11.3.0` has... a8f169f
- Synchronize `web/yarn.lock` file with `web/package.json` changes eaaa808
- Reference `submission-schema` via Git commit hash (since not released) Reference: https://python-poetry.org/docs/dep... b6e1bef
- and 10 more ...
pkalita-lbl pushed 2 commits to issue-1383-metadata-suggestion-ui microbiomedata/nmdc-server
pkalita-lbl pushed 4 commits to main microbiomedata/nmdc-schema
- Ensure dependencies are correctly classified; add deptry for continual checking ce30e81
- Remove references to remove extras set 1acbe95
- Merge branch 'main' into fix-project-dependencies 84a595e
- Merge pull request #2328 from microbiomedata/fix-project-dependencies Ensure dependencies are correctly classified 9c66367
pkalita-lbl closed a pull request on microbiomedata/nmdc-schema
Ensure dependencies are correctly classified
This is related to the error I mentioned [here](https://github.com/microbiomedata/submission-schema/pull/297#issuecomment-2619697404). Currently the dependency specifications in this project are...
pkalita-lbl pushed 19 commits to fix-project-dependencies microbiomedata/nmdc-schema
- chemical entity refactoring 6be9678
- chemical entity deprecation and new enumeration for limited set of chemicals 653d783
- chemical entity deprecation and new enumeration for limited set of chemicals 6918368
- remove set from main nmdc schema 9c8c37b
- update refscan call, upgrade refscan d585940
- update refscan call, upgrade refscan 5446500
- restore missing file ee332a9
- Update core.yaml remove HMDB 94f4159
- fixing mappings 1cc34e5
- Merge branch 'chemical-entity' of github.com:microbiomedata/nmdc-schema into chemical-entity f441d88
- remove reformatting of slot_usge description 16a02a6
- restore changed files resulting from make squeaky-clean all test 771cae4
- deprecate inchi, inchikey, smiles 9f0fbaa
- convert descriptions to comments on PVs per review 8ae82d4
- remove src files generated on test 8b2d157
- add eccode:3.4.21.12 as a meaning for alphaLP f51304a
- eccode->EC for now, second PR to replace if need be 7bfb9b9
- Merge pull request #2324 from microbiomedata/chemical-entity Chemical entity deprecation, adding enumeration for lim... c7f3e32
- Merge branch 'main' into fix-project-dependencies 84a595e
pkalita-lbl pushed 1 commit to issue-1383-metadata-suggestion-ui microbiomedata/nmdc-server
- Ensure stale suggestions get removed from list 1bc07b5
pkalita-lbl opened a draft pull request on microbiomedata/nmdc-schema
Ensure dependencies are correctly classified
This is related to the error I mentioned [here](https://github.com/microbiomedata/submission-schema/pull/297#issuecomment-2619697404). Currently the dependency specification in this project is a...
pkalita-lbl created a branch on microbiomedata/nmdc-schema
fix-project-dependencies - National Microbiome Data Collaborative (NMDC) unified data model
pkalita-lbl created a comment on a pull request on microbiomedata/submission-schema
I locally resolved the merge conflicts. However once they were resolved the project's virtual environment became uninstallable: ``` Because nmdc-schema (11.3.0) depends on mkdocs-mermaid2-plugi...