Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
pkalita-lbl created a review on a pull request on linkml/linkml-project-cookiecutter
Looks great! Thanks
pkalita-lbl created a branch on microbiomedata/nmdc-field-notes
issue-132-firebase-analytics - Mobile app for metadata collection on the go
pkalita-lbl closed an issue on linkml/linkml
Convert tests in `tests/test_prefixes` to pytest
* Ensure all tests are written in `pytest` style (top-level test functions instead of `unittest.TestCase` subclasses, plain `assert` statements) * Ensure tests only write to temporary files, if ne...
pkalita-lbl created a review comment on a pull request on linkml/linkml-project-cookiecutter
Thanks for that update! I'm a little confused why the `project.optional-dependencies` is still here though. Now that all the dev dependencies are specified in `tool.poetry.group.dev.dependencies...
pkalita-lbl closed a pull request on linkml/linkml
Issue 1720 convert test prefixes to pytests
I split this into three commits. - 1-1 conversion from unittest to pytest (note I removed __main__) - changed the path globals to pytest fixtures and used tmp_path for the ones that were writin...
pkalita-lbl closed an issue on microbiomedata/nmdc-server
Submission portal - mock up tab to add external data
This ticket is to mock up a tab in the submission portal which would allow a user to enter information about illumina short read data (fastq) data. This would replace the current process of providi...
pkalita-lbl created a comment on an issue on microbiomedata/nmdc-field-notes
> I think it took the presentation from "cursed" to "systematically cursed." 😂 Yeah. I was thinking that if you don't already know what a regular expression is it takes from gobbledygook to ...
pkalita-lbl pushed 1 commit to issue-227-examples-in-schema-validation microbiomedata/submission-schema
- Bring existing data examples inline with updated validation e285974
pkalita-lbl opened a draft pull request on microbiomedata/submission-schema
Ensure all examples in schema validate
Fixes #227
pkalita-lbl created a tag on microbiomedata/nmdc-schema
v11.3.0rc1 - National Microbiome Data Collaborative (NMDC) unified data model
pkalita-lbl published a release on microbiomedata/nmdc-schema
v11.3.0rc1
## What's Changed * Document validation with linkml-validate and navigating the schema with schemaview by @sierra-moxon in https://github.com/microbiomedata/nmdc-schema/pull/2281 * Remodeling of ...
pkalita-lbl closed an issue on microbiomedata/nmdc-schema
Invalid `collection_time` and `collection_time_inc` examples in final schema
When the `collection_time` and `collection_time_inc` slots are defined in `src/schema/portal_mixs_inspired.yaml` they have reasonable looking examples: ```yaml examples: - value: 13:33 - ...
pkalita-lbl pushed 2 commits to main microbiomedata/nmdc-schema
pkalita-lbl closed a pull request on microbiomedata/nmdc-schema
Update date and time examples to be strings
Fixes #2314 These changes define the date/time examples as strings in the YAML source so that they don't get improperly munged by YAML parsing and serializing.
pkalita-lbl created a review on a pull request on geneontology/wc-gocam-viz
Yep, if the icon is needed in other places in the future we could look at hoisting the function up to a place where it can be shared by multiple components. But no need to overly abstract things at...
pkalita-lbl created a review comment on a pull request on linkml/linkml-project-cookiecutter
Can this be removed? Was it just a bit of errant copy-pasting?
pkalita-lbl created a review comment on a pull request on linkml/linkml-project-cookiecutter
I'm not sure how I feel about using `project.optional-dependencies` for development dependencies. My understanding is that `project.optional-dependencies` is designed for _downstream clients_ of yo...
pkalita-lbl created a review on a pull request on linkml/linkml-project-cookiecutter
Thanks for taking care of this! I just had one recommendation on how dev dependencies are being specified.
pkalita-lbl created a review on a pull request on linkml/linkml-project-cookiecutter
Thanks for taking care of this! I just had one recommendation on how dev dependencies are being specified.
pkalita-lbl created a comment on a pull request on geneontology/wc-gocam-viz
@vanaukenk Correct. This bug was _not_ present in the last official widget version (1.0.1). It was only present in a few beta versions used on noctua-dev.
pkalita-lbl created a review on a pull request on microbiomedata/submission-schema
I think I still haven't totally wrapped my head around this voting process and notebooks system, but nothing looks totally crazy here.
pkalita-lbl opened a pull request on microbiomedata/nmdc-schema
Update date and time examples to be strings
Fixes #2314 These changes define the date/time examples as strings in the YAML source so that they don't get improperly munged by YAML parsing and serializing.
pkalita-lbl created a branch on microbiomedata/nmdc-schema
issue-2314-collection-time-examples - National Microbiome Data Collaborative (NMDC) unified data model