Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
cmungall created a comment on an issue on berkeleybop/artificial-intelligence-ontology
Yes, this was definitely is-a overloading but fixed now <img width="286" alt="image" src="https://github.com/user-attachments/assets/390339d2-c697-42bb-ac8f-041a22d7c29e">
cmungall closed an issue on berkeleybop/artificial-intelligence-ontology
we have asserted multi-heriarchies
Neural Turing Machine Network is a AIO:DeepFeedForwardNetwork and a AIO:LongShortTermMemory
cmungall closed an issue on berkeleybop/artificial-intelligence-ontology
GPT on missing parent classes (rerun)
https://docs.google.com/document/d/1pkUipJcRlNVSciPoxzdv6j20vi7tfsTLux2Yk6GcE8o/edit
cmungall created a comment on an issue on berkeleybop/artificial-intelligence-ontology
I think this is done?
cmungall created a comment on an issue on berkeleybop/artificial-intelligence-ontology
This seems like an easy win! Can point to OAK docs and give a few examples e.g `runoak -i sqlite:obo:aio terms`
cmungall created a comment on an issue on berkeleybop/artificial-intelligence-ontology
Is this still an issue? Which artifacts do you mean?
cmungall closed an issue on berkeleybop/artificial-intelligence-ontology
Remove 'field of inquiry' from Machine Learning Task definition
### Issue Remove 'field of inquiry' from Machine Learning Task definition ### Release Version _No response_
cmungall created a comment on an issue on berkeleybop/artificial-intelligence-ontology
What is an example of a term that should be classified under two categories?
cmungall opened an issue on INCATools/kgcl
Make it obvious where to get the different artefacts from
Related: https://github.com/INCATools/kgcl-rdflib/issues/68 The README and/or the markdown docs under [w3id.org/kgcl/](https://w3id.org/kgcl/) should make it obvious where to go for - owl - ...
cmungall created a comment on an issue on INCATools/kgcl-rdflib
The action here is to remove *all* generated files in this repo, everything under owl/ and python/. These are now in the main repo!
cmungall created a comment on a pull request on biopragmatics/pyobo
I am not sure blanket removal of non-isa relationships is best... On Mon, Nov 4, 2024 at 8:54 AM Charles Tapley Hoyt ***@***.***> wrote: > References #170 <https://github.com/biopragmatics/p...
cmungall opened an issue on biopragmatics/obo-db-ingest
Decouple annotations/associations from the main release obo/owl files
Current pyobo includes annotations (in the sense of GO annotations, not OWL annotations) modeled as `relationship`s (i.e `S subClassOf R some O`). An example of this is ec.obo: ```yaml [Term...
cmungall created a comment on an issue on information-artifact-ontology/ontology-metadata
This seems a bit odd. It’s a synonym composed of symbols and labels but is not itself a symbol On Tue, Nov 5, 2024 at 3:19 AM Anita Caron ***@***.***> wrote: > The property has been used in ...
cmungall created a comment on an issue on OBOFoundry/OBOFoundry.github.io
Both. Most phenotype ontologies treat these as synonyms or distinctions of degree eg https://www.ebi.ac.uk/ols4/ontologies/mp/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FMP_0005559...
cmungall created a comment on an issue on OBOFoundry/OBOFoundry.github.io
yes, OBA=traits (e.g. `blood glucose amount`), phenotypes (e.g. elevated blood glucose) would go in HP/MP/etc for species specific, upheno for species-neutral
cmungall created a comment on an issue on biopragmatics/pyobo
This is still a major impediment to reusing the fantastic work in obo-db-ingest. E.g. here is the latest rhea ingest <img width="1689" alt="image" src="https://github.com/user-attachments/ass...
cmungall created a branch on linkml/linkml
change-snapshots-for-latest-rdflib - Linked Open Data Modeling Language
cmungall created a comment on an issue on linkml/linkml
Minor: `linkml_runtime.index` was flagged as potentially unused. This is being used in `linkml-map`, and is potentially very useful much more generally. The fact that it is tucked away in this w...
cmungall pushed 1 commit to main linkml/linkml
- Make materialization (attributes and patterns) default behaviour in `gen-linkml` (#2341) * make materialization defa... d9c2eb9
cmungall closed a pull request on linkml/linkml
Make materialization (attributes and patterns) default behaviour in `gen-linkml`
This PR seeks to make materialization of both induced slots (as attributes) and structured patterns (as patterns) universal/true by default in `gen-yaml`. There are two optional arguments called...
cmungall opened an issue on geneontology/go-ontology
Split "ice binding" into "ice nucleation" and "antifreeze"
This conflates two different functions ```yaml id: GO:0050825 name: ice binding namespace: molecular_function def: "Binding to ice, water reduced to the solid state by cold temperature. It i...
cmungall created a comment on an issue on OBOFoundry/OBOFoundry.github.io
What's the relationship to terms in OBA? Cc @matentzn
cmungall created a comment on an issue on geneontology/go-ontology
>> GO:0102910 dirigent protein activity EC:1.10.3.- >> META&id=G-15194 states: > Dirigent protein is a coupling agent that lacks a catalytically active oxidative center, but can confer stereospeci...
cmungall opened a pull request on simonw/llm
Allow passing of can_stream in openai_models.py
Fixes #599 A longer term fix would be to use something like Pydantic so we don't repeat ourselves, but this would be a bit of a refactor
cmungall pushed 1 commit to patch-2 cmungall/llm
- Allow passing of can_stream in openai_models.py Fixes #599 A longer term fix would be to use something like Pyda... 6a68078