Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
cmungall opened an issue on simonw/llm
Allow setting can_stream in extra-openai-models.yaml to allow for o1 over proxy
o1 support was added in response to - #570 However, this hardwires the streamability to named o1 models. I am accessing o1-preview via a (litellm) proxy, so I get a `'message': 'litellm.BadR...
cmungall created a comment on a pull request on obophenotype/upheno
I think this is a good description of the current state of things. But this is WAY too complicated for 99% of the intended consumers. Things such as whether HPO terms are subsumed by MPO terms is s...
cmungall pushed 1 commit to main cmungall/chebi-llm-classifier
- moved core logic out of notebook f27d87a
cmungall created a repository: cmungall/chebi-llm-classifier
https://github.com/cmungall/chebi-llm-classifier - LLM-generated CHEBI classifiers
cmungall pushed 1 commit to main linkml/linkml
- Add deprecation warnings to validators (#2386) * add deprecation warnings to validators * lint 8cd66bb
cmungall closed a pull request on linkml/linkml
Add deprecation warnings to validators
Related to: https://github.com/linkml/linkml/issues/2384 Add deprecation warnings to `linkml.validators` and `linkml.utils.validation` - they're already marked as deprecated. As far as I can tel...
cmungall created a comment on an issue on geneontology/obographs
the robot output is compliant with json-schema, see https://stackoverflow.com/questions/16204871/what-is-the-difference-between-required-vs-optional-in-json-schema sounds like ontobio needs fix...
cmungall created a comment on an issue on geneontology/go-ontology
Dmel: GO:0009047 ! dosage compensation by hyperactivation of X chromosome Mammals: GO:0009048 ! dosage compensation by inactivation of X chromosome C elegans: GO:0042464 ! dosage compensation by ...
cmungall opened an issue on obophenotype/cell-ontology
Remove metazoan taxon constraint for stem cell
Hey, ontobot! * delete edge CL:0000034 RO:0002162 NCBITaxon:33208 See https://github.com/geneontology/go-ontology/issues/23764
cmungall created a comment on an issue on geneontology/go-ontology
My point is that if you see > GO:0004705 | JUN kinase activity | IEA with 2.7.11.24 There is a bug in someone's EC2GO propagation as this should never propagate as we should never propagate b...
cmungall opened an issue on geneontology/go-ontology
obsolete terms differentiated using CHEBI ion (CHEBI:24870)
## P-type ion transporter activity ```yaml id: GO:0140358 name: P-type transmembrane transporter activity namespace: molecular_function def: "Primary active transporter that auto-phosphory...
cmungall created a review on a pull request on obophenotype/developmental-stage-ontologies
same concerns as @gouttegd - the docs need a bit more customization. Particularly wrt what files should be edited
cmungall created a review comment on a pull request on obophenotype/developmental-stage-ontologies
is this really the SOP? This edit file looks like an import-ontology ontology
cmungall created a comment on a pull request on OBOFoundry/COB
I'm afraid I only have time now for a cursory look. Minor: cob-to-external is now subsumed into cob-edit. This makes sense (we should make sure to sync docs in this PR or closely after). It look...
cmungall created a comment on an issue on geneontology/go-ontology
no objection to the constraint but if this is done to prevent false propagation from EC this should not be necessary as the EC term is broader than the GO term, cc @balhoff On Thu, Oct 24, 202...
cmungall created a comment on an issue on monarch-initiative/mondo
here's the issue ```yaml id: MONDO:0006036 name: granulosa cell tumor intersection_of: MONDO:0005070 ! neoplasm intersection_of: disease_has_location CL:0000501 ! granulosa cell ```
cmungall pushed 1 commit to main INCATools/ontology-access-kit
- Adding more docs on how to use LLMs with OAK (#819) * Adding more docs on how to use LLMs with OAK * format 7c2dc22
cmungall closed a pull request on INCATools/ontology-access-kit
Adding more docs on how to use LLMs with OAK
cmungall created a comment on an issue on monarch-initiative/malco
I think the name can stay, just change the description in the sidebar and the readme!
cmungall created a comment on an issue on monarch-initiative/curategpt
https://docs.streamlit.io/develop/api-reference/execution-flow/st.experimental_rerun On Tue, Oct 22, 2024 at 7:59 AM Harry Caufield ***@***.***> wrote: > c/o @realmarcin <https://github.co...