Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
cmungall opened an issue on OBOFoundry/COB
relabel cellular anatomical entity to cellular anatomical structure
https://github.com/geneontology/go-ontology/issues/28978
cmungall opened an issue on OBOFoundry/COB
Add instructions on how to edit COB
Do I update the edit.owl, a google sheet, or a tsv?
cmungall closed an issue on INCATools/ontology-access-kit
add max depth for `vskit expand`
maybe I don't want permissible values created for all of the very specific sub-classes that are eligible in the dynamic enum definition
cmungall opened a pull request on INCATools/ontology-access-kit
Moved Jupter notebooks to be part of sphinx docs
Fixes #758
cmungall created a branch on INCATools/ontology-access-kit
issue-758 - Ontology Access Kit: A python library and command line application for working with ontologies
cmungall pushed 1 commit to main INCATools/ontology-access-kit
- Remove outdated warning, fix minor typos (#814) Fixing minor typos 5152b39
cmungall closed a pull request on INCATools/ontology-access-kit
Remove outdated warning, fix minor typos
The owl tutorial has an outdated warning about a PR that needed merging in one of the dependencies: https://github.com/INCATools/ontology-access-kit/blob/main/docs/intro/tutorial06.rst?plain=1#L...
cmungall created a comment on an issue on OBOFoundry/OBO-Dashboard
Good point. Ultimately I think we need two sets of (possibly overlapping) tests, one for base and one for release. But appreciate this might be a big change!
cmungall created a comment on a pull request on OBOFoundry/OBO-Dashboard
@coderabbitai, thanks for your suggestion. It looks like @anitacaron acted on your request to add google-style docstrings. My preference is for ReST-style, especially as we SHOULD always be providi...
cmungall closed an issue on linkml/linkml
yuml generator (and all network tests) - intermittent test failure - replace live API calls with recorded requests.
**Describe the bug** Tests will sporadically fail after hanging for 60 seconds when making calls to live APIs, particularly in the yuml generator, but this is likely to be true for any test that d...
cmungall closed an issue on linkml/linkml
Generate PlantUML locally or mark all tests flaky
**Describe the bug** PlantUML generation depends on a web API called "kroki": https://github.com/linkml/linkml/blob/0c3afa90701dd18ce874f6103cc7668684eb697d/linkml/generators/plantumlgen.py#L97-L1...
cmungall pushed 1 commit to main linkml/linkml
- [plantuml] mark and skip plantuml docker tests when docker not present (#2373) * mark and skip docker tests when doc... 6f7a018
cmungall closed an issue on linkml/linkml
plantuml tests now fail without docker server
**Describe the bug** I don't keep a docker server running on my local machine and i would prefer it if running one was not required for the tests When I run tests locally, i get this ``` ER...
cmungall closed a pull request on linkml/linkml
[plantuml] mark and skip plantuml docker tests when docker not present
fix: https://github.com/linkml/linkml/issues/2342 fix: https://github.com/linkml/linkml/issues/1956 fix: https://github.com/linkml/linkml/issues/1917 let us be done with the plantuml tests bei...