Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
bshifaw created a repository: bshifaw/massprov-website
https://github.com/bshifaw/massprov-website - MassProv Website
bshifaw created a review comment on a pull request on broadinstitute/hidive
The code was panicking when working a particular sample that may have records missing chromosome info so a default `unknown` name was added for these situation. ``` Searching for similar rea...
bshifaw opened a pull request on broadinstitute/hidive
Bs kvg improve model
- Adding option to search all short reads, not only the reads that fall within regions of the reference the long reads have aligned to. - Breaking detect_relavent_loci function into subfunctions ...
bshifaw pushed 1 commit to bs_kvg_improve_model broadinstitute/hidive
- Having a default chrom name when iterating through short reads records that may not have a name 2d1f973
bshifaw pushed 1 commit to bs_kvg_improve_model broadinstitute/hidive
- Adding option to search all short reads for rescue command 3ea3332
bshifaw pushed 1 commit to main broadinstitute/hidive
- Fix minor lint warnings and improve code quality (#25) * optimize imports and remove unused imports * unused variab... 26b9c3a
bshifaw closed a pull request on broadinstitute/hidive
Fix minor lint warnings and improve code quality
This pull request addresses lint warnings and errors by updating variable declarations, handling unused variables/functions, and reordering imports.
bshifaw pushed 66 commits to bs_bacon_minor_1 broadinstitute/hidive
- Kvg mldbg (#26) * Simplified much of the logic around creating the joint assembly graph * Added a read error corr... cfe369f
- Bump version: 0.1.64 → 0.1.65 f9cac67
- Minor bug fixes for things that broke during the merge 417a1d8
- Bump version: 0.1.65 → 0.1.66 a311449
- New command to recruit a subset of reads from rescued reads. New functionality to remove tangles from de Bruijn graph... a57b978
- Bump version: 0.1.66 → 0.1.67 4a763c6
- Kvg coasm (#28) * Assemble two properly phased diploid haplotypes * Remove unneeded poa_assemble command * Fixed a... acea162
- Bump version: 0.1.67 → 0.1.68 ca0536a
- Moved ILP optimization to kvg_ilp branch for further development (#29) * Moved ILP optimization to kvg_ilp branch fo... 1a818c8
- Bump version: 0.1.68 → 0.1.69 e2e7193
- Kvg stitch (#30) * Added read error correction workflow * Added .dockstore.yml 427f12f
- Update bumpversion to automatically update Docker image in WDLs 1e15f9d
- Bump version: 0.1.69 → 0.1.70 4539747
- Kvg improve docker (#31) * Add minimap2 2.28 to Docker image * Fix missing gcloud installation in final image 9214456
- Bump version: 0.1.70 → 0.1.71 4d15045
- Kvg docker samtools (#32) * Added samtools to the Dockerfile 052c5f2
- Bump version: 0.1.71 → 0.1.72 43fa901
- Kvg multiple windows (#33) * Find superbubbles in graph * When a superbubble has more than two paths, trim off the ... 9fd2116
- Bump version: 0.1.72 → 0.1.73 321de9b
- New contig assembly method. Fixed an issue with CRAM reading. (#34) 632fa90
- and 46 more ...
bshifaw pushed 1 commit to main broadinstitute/hidive
- Add eval-model command and refactor train command (#36) * Added rock curves to train.rs, added eval_model.rs * fi... 518db67
bshifaw closed a pull request on broadinstitute/hidive
Add eval-model command and refactor train command
- added command to evaluate existing models : eval-model - refactored the train command - added parameters to define testing data - added functions to generate rock plots after training ...
bshifaw pushed 2 commits to bs_enhance_train broadinstitute/hidive
bshifaw opened a pull request on broadinstitute/hidive
Add eval-model command and refactor train command
- added command to evaluate existing models : eval-model - refactored the train command - added parameters to define testing data - added functions to generate rock plots after training ...
bshifaw pushed 1 commit to bs_enhance_train broadinstitute/hidive
- removed commented lines in train.rs a83def7
bshifaw pushed 52 commits to bs_enhance_train broadinstitute/hidive
- Kvg mldbg (#26) * Simplified much of the logic around creating the joint assembly graph * Added a read error corr... cfe369f
- Bump version: 0.1.64 → 0.1.65 f9cac67
- Minor bug fixes for things that broke during the merge 417a1d8
- Bump version: 0.1.65 → 0.1.66 a311449
- New command to recruit a subset of reads from rescued reads. New functionality to remove tangles from de Bruijn graph... a57b978
- Bump version: 0.1.66 → 0.1.67 4a763c6
- Kvg coasm (#28) * Assemble two properly phased diploid haplotypes * Remove unneeded poa_assemble command * Fixed a... acea162
- Bump version: 0.1.67 → 0.1.68 ca0536a
- Moved ILP optimization to kvg_ilp branch for further development (#29) * Moved ILP optimization to kvg_ilp branch fo... 1a818c8
- Bump version: 0.1.68 → 0.1.69 e2e7193
- Kvg stitch (#30) * Added read error correction workflow * Added .dockstore.yml 427f12f
- Update bumpversion to automatically update Docker image in WDLs 1e15f9d
- Bump version: 0.1.69 → 0.1.70 4539747
- Kvg improve docker (#31) * Add minimap2 2.28 to Docker image * Fix missing gcloud installation in final image 9214456
- Bump version: 0.1.70 → 0.1.71 4d15045
- Kvg docker samtools (#32) * Added samtools to the Dockerfile 052c5f2
- Bump version: 0.1.71 → 0.1.72 43fa901
- Kvg multiple windows (#33) * Find superbubbles in graph * When a superbubble has more than two paths, trim off the ... 9fd2116
- Bump version: 0.1.72 → 0.1.73 321de9b
- New contig assembly method. Fixed an issue with CRAM reading. (#34) 632fa90
- and 32 more ...