Ecosyste.ms: Timeline
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Lilly-May opened an issue on theislab/ehrapy-tutorials
Update tutorials to new feature type detection
Just an issue for myself to collect what I need to adapt in the tutorials to be compatible with the changes introduced while tackling https://github.com/theislab/ehrapy/issues/701. - [ ] Updat...eroell pushed 1 commit to feature/bias_tutorial theislab/ehrapy-tutorials
- norm bias fully real data, moved up bc63998
eroell pushed 1 commit to feature/bias_tutorial theislab/ehrapy-tutorials
- forgot to delete unused cell 8e4e2e6
eroell pushed 1 commit to feature/bias_tutorial theislab/ehrapy-tutorials
- simplify and slightly tidy up 78d9886
eroell pushed 10 commits to feature/bias_tutorial theislab/ehrapy-tutorials
- Update notebooks to infer feature types 6c779b5
- Updated FHIR notebook 393b99b
- Final notebook updates f7c7eeb
- Merge pull request #25 from theislab/update_mimic_fate_feature_inference Update notebooks to incorporate ep.ad.infer... 48acd52
- Fix mimic notebook e261fc1
- Fix MIMIC-II Signed-off-by: zethson <[email protected]> f6579ed
- Fix MIMIC-II fate Signed-off-by: zethson <[email protected]> 10f99be
- Fix fate Signed-off-by: zethson <[email protected]> f2d1a3b
- Rerun 2 NBs with new logging Signed-off-by: zethson <[email protected]> 0b945f9
- Merge branch 'main' into feature/bias_tutorial 6a576ca
eroell pushed 1 commit to feature/bias_tutorial theislab/ehrapy-tutorials
- norm example more concise and ehrapyfied e1ea372
eroell pushed 1 commit to feature/bias_tutorial theislab/ehrapy-tutorials
- missforest for imputation 0c1a7cf
Zethson pushed 1 commit to main theislab/ehrapy-tutorials
- Rerun 2 NBs with new logging Signed-off-by: zethson <[email protected]> 0b945f9
Zethson pushed 1 commit to main theislab/ehrapy-tutorials
- Fix fate Signed-off-by: zethson <[email protected]> f2d1a3b
Zethson pushed 1 commit to main theislab/ehrapy-tutorials
- Fix MIMIC-II fate Signed-off-by: zethson <[email protected]> 10f99be
Zethson pushed 1 commit to main theislab/ehrapy-tutorials
- Fix MIMIC-II Signed-off-by: zethson <[email protected]> f6579ed
Lilly-May pushed 188 commits to detached2 theislab/ehrapy-tutorials
- Initial commit 9449c08
- add first few tutorials Signed-off-by: zethson <[email protected]> 4708837
- update tutorials to use encoded Signed-off-by: zethson <[email protected]> bf40df0
- fix MIMIC-III encode Signed-off-by: zethson <[email protected]> 066eca8
- fix header 2587dca
- MIMIC-II: Wrote some introduction Signed-off-by: zethson <[email protected]> af54316
- Add orphan to README.rst fd031c4
- add rank_features_groups calculations Signed-off-by: zethson <[email protected]> 1f33f93
- Fix notebook mimic2 2127a67
- Update impute API in mimic2 notebook 025ed30
- Update mimic2 notebook 37b2072
- fix imports & nicer annotation plots Signed-off-by: zethson <[email protected]> 56355cb
- remove qc test Signed-off-by: zethson <[email protected]> 71d5eb1
- add QC & imputation to MIMIC-II Signed-off-by: zethson <[email protected]> 8178ed0
- add new medcat notebook Signed-off-by: zethson <[email protected]> 7358e86
- add new medcat notebook Signed-off-by: zethson <[email protected]> 638f5f9
- add connectiviy kernel demo Signed-off-by: zethson <[email protected]> 296260d
- add more cellrank demos Signed-off-by: zethson <[email protected]> 089d51e
- add fate tutorial Signed-off-by: zethson <[email protected]> 0489b46
- add normalization to MIMIC-II Signed-off-by: zethson <[email protected]> c7a3ae0
- and 168 more ...
Lilly-May pushed 160 commits to detached theislab/ehrapy-tutorials
- Initial commit 9449c08
- add first few tutorials Signed-off-by: zethson <[email protected]> 4708837
- update tutorials to use encoded Signed-off-by: zethson <[email protected]> bf40df0
- fix MIMIC-III encode Signed-off-by: zethson <[email protected]> 066eca8
- fix header 2587dca
- MIMIC-II: Wrote some introduction Signed-off-by: zethson <[email protected]> af54316
- Add orphan to README.rst fd031c4
- add rank_features_groups calculations Signed-off-by: zethson <[email protected]> 1f33f93
- Fix notebook mimic2 2127a67
- Update impute API in mimic2 notebook 025ed30
- Update mimic2 notebook 37b2072
- fix imports & nicer annotation plots Signed-off-by: zethson <[email protected]> 56355cb
- remove qc test Signed-off-by: zethson <[email protected]> 71d5eb1
- add QC & imputation to MIMIC-II Signed-off-by: zethson <[email protected]> 8178ed0
- add new medcat notebook Signed-off-by: zethson <[email protected]> 7358e86
- add new medcat notebook Signed-off-by: zethson <[email protected]> 638f5f9
- add connectiviy kernel demo Signed-off-by: zethson <[email protected]> 296260d
- add more cellrank demos Signed-off-by: zethson <[email protected]> 089d51e
- add fate tutorial Signed-off-by: zethson <[email protected]> 0489b46
- add normalization to MIMIC-II Signed-off-by: zethson <[email protected]> c7a3ae0
- and 140 more ...
Zethson closed a pull request on theislab/ehrapy-tutorials
Update notebooks to incorporate ep.ad.infer_feature_types
The MIMIC-II Introduction, MIMIC-II Patient Fate, and the FHIR tutorial notebooks all use KNN imputation. As KNN imputation will require `ep.ad.infer_feature_types` to be run beforehand as soon as ...review-notebook-app[bot] created a comment on a pull request on theislab/ehrapy-tutorials
Check out this pull request on <a href="https://app.reviewnb.com/theislab/ehrapy-tutorials/pull/25"><img align="absmiddle" alt="ReviewNB" height="28" class="BotMessageButtonImage" src="https...
Lilly-May opened a pull request on theislab/ehrapy-tutorials
Update notebooks to incorporate ep.ad.infer_feature_types
The MIMIC-II Introduction, MIMIC-II Patient Fate, and the FHIR tutorial notebooks all use KNN imputation. As KNN imputation will require `ep.ad.infer_feature_types` to be run beforehand as soon as ...Lilly-May pushed 1 commit to update_mimic_fate_feature_inference theislab/ehrapy-tutorials
- Final notebook updates f7c7eeb
Lilly-May pushed 185 commits to update_mimic_fate_feature_inference theislab/ehrapy-tutorials
- Initial commit 9449c08
- add first few tutorials Signed-off-by: zethson <[email protected]> 4708837
- update tutorials to use encoded Signed-off-by: zethson <[email protected]> bf40df0
- fix MIMIC-III encode Signed-off-by: zethson <[email protected]> 066eca8
- fix header 2587dca
- MIMIC-II: Wrote some introduction Signed-off-by: zethson <[email protected]> af54316
- Add orphan to README.rst fd031c4
- add rank_features_groups calculations Signed-off-by: zethson <[email protected]> 1f33f93
- Fix notebook mimic2 2127a67
- Update impute API in mimic2 notebook 025ed30
- Update mimic2 notebook 37b2072
- fix imports & nicer annotation plots Signed-off-by: zethson <[email protected]> 56355cb
- remove qc test Signed-off-by: zethson <[email protected]> 71d5eb1
- add QC & imputation to MIMIC-II Signed-off-by: zethson <[email protected]> 8178ed0
- add new medcat notebook Signed-off-by: zethson <[email protected]> 7358e86
- add new medcat notebook Signed-off-by: zethson <[email protected]> 638f5f9
- add connectiviy kernel demo Signed-off-by: zethson <[email protected]> 296260d
- add more cellrank demos Signed-off-by: zethson <[email protected]> 089d51e
- add fate tutorial Signed-off-by: zethson <[email protected]> 0489b46
- add normalization to MIMIC-II Signed-off-by: zethson <[email protected]> c7a3ae0
- and 165 more ...