Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
natefoo closed a draft pull request on galaxyproject/galaxy
[WIP] Enhance cut tool
... to allow use of step size within ranges, specifying the fill char, and allow handling headers in 3 different ways.
hujambo-dunia created a comment on an issue on galaxyproject/galaxy
@hexylena @dannon Proposed mocks for enhancements and bug fixes. Feedback welcome :) 
mvdbeek created a review comment on a pull request on galaxyproject/galaxy
I don't think this looks good, but y'all are the kubernetes users so if you want to do this you can. Is this still needed after the fix that was applied earlier? It seems like finding that fix woul...
nuwang created a review comment on a pull request on galaxyproject/galaxy
@mvdbeek Are you ok with extending JobState this way? Or should we modify the job state class itself and add an extra attribute to tack on extra config like this?
nsoranzo pushed 18 commits to dev galaxyproject/galaxy
- Fix extra call to test_data_path that requires an admin key 569eeb3
- Put cached jobs back into queue on handler restart and don't recover job wrapper, which will fail since we don't act... e1c0c08
- Merge pull request #19012 from mvdbeek/dont_recover_cached_jobs_on_startup [24.1] Put cached jobs back into queue on... d1d846f
- Fix typo in hasLoadingCollectionElementsError computed property As it was, false was being used as an index instead ... 62e9b34
- Merge pull request #19011 from jmchilton/fix_extra_call_to_test_data_path [24.1] Fix extra call to test_data_path th... 666ab5e
- Merge pull request #19015 from dannon/collection-elements-store-bug [24.1] Fix collectionElementsStore's hasLoadingC... 1a6b7fe
- PR title update workflow 677c90b
- Merge pull request #19019 from arash77/backport-pr-title-update-workflow [24.0] Backporting PR title update workflow 19811a6
- remove defaults channel for conda https://www.theregister.com/2024/08/08/anaconda_puts_the_squeeze_on/ According to... 4e81a78
- update osx startup workflow to use miniforge b71b6ef
- deprecate 32bit conda installation option can be installed manually by affected users 14f382e
- Remove conda defaults channel from more places af9b9ef
- add miniforge3 to prefix search b99e3c8
- also add home for default return Co-authored-by: Nicola Soranzo <[email protected]> 57b3666
- reset default channels 56fae9b
- Merge pull request #18859 from bernt-matthias/topic/conda-defaults-24.1 [24.1] Remove defaults channel for conda usage 2cedc9a
- Merge branch 'release_24.0' into release_24.1 ed07d87
- Merge branch 'release_24.1' into dev 051c5ab
nsoranzo pushed 24 commits to master galaxyproject/galaxy
- do not remove double slashes if part of a protocol a776e80
- Enhance WorkflowCard header layout with relative positioning Added relative positioning to the workflow card header ... 79aab59
- Merge pull request #18974 from laperlej/fix_cilogon [24.1] fix CILogon redirect 5f11830
- Merge pull request #19008 from itisAliRH/workflow-card-annotation-bleedidng [24.1] Fix Workflow card controllers and... e15b6bd
- Fix job search statement building Broke in https://github.com/galaxyproject/galaxy/commit/9a4ccbc58d861c74d11271736f... ced634a
- Fix extra call to test_data_path that requires an admin key 569eeb3
- Put cached jobs back into queue on handler restart and don't recover job wrapper, which will fail since we don't act... e1c0c08
- Merge pull request #19010 from mvdbeek/fix_recursive_job_search_statement_building [24.0] Fix job search statement b... 638d13f
- Merge branch 'release_24.0' into release_24.1 d772cbc
- Merge pull request #19012 from mvdbeek/dont_recover_cached_jobs_on_startup [24.1] Put cached jobs back into queue on... d1d846f
- Fix typo in hasLoadingCollectionElementsError computed property As it was, false was being used as an index instead ... 62e9b34
- Merge pull request #19011 from jmchilton/fix_extra_call_to_test_data_path [24.1] Fix extra call to test_data_path th... 666ab5e
- Merge pull request #19015 from dannon/collection-elements-store-bug [24.1] Fix collectionElementsStore's hasLoadingC... 1a6b7fe
- PR title update workflow 677c90b
- Merge pull request #19019 from arash77/backport-pr-title-update-workflow [24.0] Backporting PR title update workflow 19811a6
- remove defaults channel for conda https://www.theregister.com/2024/08/08/anaconda_puts_the_squeeze_on/ According to... 4e81a78
- update osx startup workflow to use miniforge b71b6ef
- deprecate 32bit conda installation option can be installed manually by affected users 14f382e
- Remove conda defaults channel from more places af9b9ef
- add miniforge3 to prefix search b99e3c8
- and 4 more ...
nsoranzo pushed 3 commits to release_24.1 galaxyproject/galaxy
github-actions[bot] created a comment on a pull request on galaxyproject/galaxy
This PR was merged without a "kind/" label, please correct.
nsoranzo pushed 8 commits to release_24.1 galaxyproject/galaxy
- remove defaults channel for conda https://www.theregister.com/2024/08/08/anaconda_puts_the_squeeze_on/ According to... 4e81a78
- update osx startup workflow to use miniforge b71b6ef
- deprecate 32bit conda installation option can be installed manually by affected users 14f382e
- Remove conda defaults channel from more places af9b9ef
- add miniforge3 to prefix search b99e3c8
- also add home for default return Co-authored-by: Nicola Soranzo <[email protected]> 57b3666
- reset default channels 56fae9b
- Merge pull request #18859 from bernt-matthias/topic/conda-defaults-24.1 [24.1] Remove defaults channel for conda usage 2cedc9a
nsoranzo closed a pull request on galaxyproject/galaxy
[24.1] Remove defaults channel for conda usage
To get rid of the potential problem with the default channel in planemo usage and up-to-date installations I would suggest a backport. Instead of 24.1 we could also got further back. ## How ...
bgruening created a comment on an issue on galaxyproject/galaxy
@qchiujunhao this tool might actually help you for your use-case: https://github.com/galaxyproject/tools-iuc/issues/6460
Marie59 reopened a pull request on galaxyproject/galaxy
Add author and tools details in RO-Crate
Here we go again ! I am launching this PR on a bit of work I did to ameliorate the RO-Crate plugin. I updated the `_add_worfklow` function. I added the information on the author of the workflow...
Marie59 closed a pull request on galaxyproject/galaxy
Add author and tools details in RO-Crate
Here we go again ! I am launching this PR on a bit of work I did to ameliorate the RO-Crate plugin. I updated the `_add_worfklow` function. I added the information on the author of the workflow...
jmchilton created a comment on an issue on galaxyproject/galaxy
I really think we don't want to do HTML for this. We have an ecosystem around a Galaxy Flavored Markdown. https://docs.google.com/presentation/d/1hftxpWrzKrNaPZV0VIn6bdKPPrAApWpp02VAWL-fig8/edit#sl...
davelopez opened a draft pull request on galaxyproject/galaxy
Add some Zarr-based datatypes
Builds on top of #17614 Includes the following datatypes: - `CompressedZarrZipArchive` (`zarr.zip`): represents a Zarr ZipStore. It seems to have some limitations (i.e. doesn't behave exactly...
dannon created a comment on a pull request on galaxyproject/galaxy
Sure -- the next release won't be out for at least a month or so
github-actions[bot] created a comment on a pull request on galaxyproject/galaxy
This PR was merged without a "kind/" label, please correct.
jmchilton pushed 11 commits to dev galaxyproject/galaxy
- Allow using TRS ids as workflow id in workflow landing requst 67fff6a
- Ignore preflight options in API schema 6debec7
- Add migration 59cf716
- Redirect user to login/registration if anonymous Also fixes error handling. 8d3b2ae
- Separate private and public landing requests Private requests must be claimed before use. Public / Anonymous request... 4f497a3
- Fix unit tests f4a779e
- Parameterize public and secret props in workflow landing component Chose to make the url query param `client_secret`... 9608202
- Add selenium tests for workflow landing d5879db
- Fix test_stock.py unit test We'd treat macros.xml and sample_tool_conf.xml as potential tools and fail `assert tool_... 2565bb7
- Set server default for non-nullable public column 3c7b0c1
- Merge pull request #18979 from mvdbeek/workflow_landing_improvements Workflow landing improvements 639d302
jmchilton created a comment on a pull request on galaxyproject/galaxy
I never see those tests fail unless I have broken something but there isn't logging, it won't let me rerun them, and I have no clue how any of those changes could break those tests - you haven't to...
jmchilton created a comment on a pull request on galaxyproject/galaxy
Thanks for making those changes - I really appreciate it. The API makes a lot of coherent sense to me now but I hate creating extra work for you. Also I love seeing Selenium tests - thanks so much ...
jmchilton created a review comment on a pull request on galaxyproject/galaxy
Fetching by instance ID gave me really unexpected behavior in workflow rerun API - I'd check that out and make sure this is giving you the expected behavior and that you and I are the on the same p...
dometto created a comment on a pull request on galaxyproject/galaxy
Thanks so much @dannon! I see this PR was tagged for the 24.2 milestone. Could you let us know if there is a set or approximiate release date for this? That will help us determine whether it is wor...
nsoranzo pushed 4 commits to dev galaxyproject/galaxy
- Disallow SQLAlchemy 2.0.36 due to https://github.com/sqlalchemy/sqlalchemy/issues/12019 . 3f9cdb4
- Update Python dependencies by running `make update-dependencies`. 82e7fd9
- Fixes for mypy 1.12.0 9f78065
- Merge pull request #19031 from galaxybot/dev_auto_update_dependencies Update Python dependencies aef57db
nsoranzo closed a pull request on galaxyproject/galaxy
Update Python dependencies
by running `make update-dependencies`.
hexylena created a comment on an issue on galaxyproject/galaxy
``` # chronyc -n tracking Reference ID : B950F724 (185.80.247.36) Stratum : 2 Ref time (UTC) : Tue Oct 22 09:44:29 2024 System time : 929.234680176 seconds slow of NTP time ``...
hexylena closed an issue on galaxyproject/galaxy
History not updated/ui synced
**Describe the bug** I will occasionally start a job and the history will not update to show the outputs. Additionally when I refresh, the history will occasionally not. Today after updating I'v...
