Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
davelopez created a review on a pull request on galaxyproject/galaxy
Thanks for the cleaning! :pray:
hechth created a comment on an issue on galaxyproject/galaxy
> @jmchilton at GCC it was discussed that we might make `deferred` the default or at least make it more prominent in the UI. That is maybe a bit extreme but I just feel like there should be the o...
qchiujunhao opened an issue on galaxyproject/galaxy
Galaxy Tool Report XML API
# Objective Develop a new feature for the Galaxy platform that enables tool developers to create a standard HTML report by specifying a folder containing CSV and image files. This feature will ex...
bernt-matthias created a review comment on a pull request on galaxyproject/galaxy
Seems to be arbitrary strings for all: - [format Param](https://github.com/galaxyproject/galaxy/blob/9fb00e19314265f1a31b42d053862855a2075d10/lib/galaxy/tool_util/xsd/galaxy.xsd#L4199) - [fty...
bernt-matthias created a review comment on a pull request on galaxyproject/galaxy
Only inputs should allow for multiple formats. Check if this can be covered by the xsd definition.
bernt-matthias created a review comment on a pull request on galaxyproject/galaxy
```suggestion assert len(linter_names) == 134 ```
bernt-matthias created a comment on a pull request on galaxyproject/galaxy
I reverted the changes to `lib/galaxy/tool_util/deps/resolvers/conda.py` as suggested by @nsoranzo
hexylena created a comment on an issue on galaxyproject/galaxy
thanks @ElectronicBlueberry that's very exciting to see and I appreciate all of the responses and plans! 💜
bernt-matthias created a comment on an issue on galaxyproject/galaxy
@jmchilton at GCC it was discussed that we might make `deferred` the default or at least make it more prominent in the UI.
natefoo created a comment on an issue on galaxyproject/galaxy
We'd need to have those tools actually be installable from the TS before we hide them would we not? Some tools (even very simple text processing tools) work slightly differently than their TS co...
mvdbeek created a comment on an issue on galaxyproject/galaxy
Probably the collection wasn't finalized yet ? I think we did some work on that in the meantime. I'm not sure this is really resolved, but I guess we'll get a new issue if it re-appears.
mvdbeek closed an issue on galaxyproject/galaxy
Problem building metadata with readMSData tool in a workflow on a collection
**Describe the bug** I'm getting this error while running the [MSnbase readMSData tool](https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/msnbase_readmsdata), when ru...
mvdbeek pushed 2 commits to dev galaxyproject/galaxy
hechth opened an issue on galaxyproject/galaxy
Allow loading all datasets listed in uploader as "deferred" with a single button.
If I am uploading files (or linking files from data library, whatsoever), in the upload dialog - if I want a dataset to be deferred, I have to click this on every individual dataset. Can this be ma...
lldelisle created a comment on a pull request on galaxyproject/galaxy
Hi everyone, Not sure this would help in this workflow as I need to create a new column anyway... But this is generally speaking a really good idea.
mvdbeek pushed 1 commit to test.galaxyproject.org galaxyproject/galaxy
- Downgrade cryptography 5ee1085
ElectronicBlueberry created a comment on an issue on galaxyproject/galaxy
I think the text on an element should still be selectable, rather than also dragging the entire element. There is plenty of space to drag the element by, and we could also add a dedicated dragging ...
mvdbeek pushed 117 commits to test.galaxyproject.org galaxyproject/galaxy
- Restore session free acccess broken with... https://github.com/galaxyproject/galaxy/commit/12b34ff47c3e4bb86e2ba5d88... 7f4bb4f
- Add workflow to update PR title based on target branch version 4160c31
- Use pull_request_target instead of pull_request Co-authored-by: Nicola Soranzo <[email protected]> 17a124e
- use branches instead of if in the job, add permissions e5acd13
- Trigger workflow on edited PR d3c9e03
- user pref model enable for remote user eb8019c
- user api remote user disable email & username 2699893
- user api remote user disable email & username f99f64f
- linting 7a7a278
- Merge pull request #18680 from jmchilton/restore_tool_shed_sessionless_apis [23.1] Fix toolshed sessionless access t... d474492
- Merge branch 'galaxyproject:dev' into Update-PR-Title-Workflow 6a8df78
- Optimize to_history_dataset_association in __create_datasets_from_library_folder ebc5dc9
- add bioblend tests e3fb5bd
- Using `stage_addition` and `add_pending_items` functions instead of `add_dataset` 46cbd11
- Add WebDAV as user file source Adds WebDAV example template, configuration and updates the docs, and the file source... 22791a8
- lint fix 83eabbe
- Add images of the webdav conf and template and update file source templates image 2ca2842
- lint fix 1c9c33e
- remove use_temp_files configuration parameter 3d28b2b
- Add new config parameter for file sources temp dir and update the webdav file source 22863a1
- and 97 more ...
mvdbeek opened a pull request on galaxyproject/galaxy
Fix test_stock.py unit test
We'd treat macros.xml and sample_tool_conf.xml as potential tools and fail `assert tool_source.parse_id()`. ## How to test the changes? (Select all options that apply) - [ ] I've included appr...
wm75 created a comment on a pull request on galaxyproject/galaxy
> And then adding more advanced option in that new selection when - including like comment line skipping and table type options (stuff like break on commas instead of tabs). But that might be overk...
bgruening created a comment on an issue on galaxyproject/galaxy
> @bgruening given that this is kind of relevant, is there any move towards this? I don't think so. I like the `add hidden="true" to all built-in tools from tool_conf.xml_sample` idea. It's a g...
hexylena opened an issue on galaxyproject/galaxy
Workflow reports: inputs producing textual output/errors
There's two things here: ```` ## Workflow Inputs ```galaxy invocation_inputs() ``` ```` has been turned into `history_dataset_collection_display(input=Genome Assemblies)` which seems odd...
hexylena opened an issue on galaxyproject/galaxy
Workflow report: no indication that datasets included via `invocation_outputs` are trimmed
These have all been trimmed to 5 lines but this isn't mentioned or shown anywhere as far as I can see which can be very misleading for a report's reader. ![bad2](https://github.com/user-attachme...
hexylena opened an issue on galaxyproject/galaxy
[feature request] hide subworkflow outputs, regardless of subworkflow state
I am currently working on the use case where we have 3 subworkflows. These workflows are meant to be runnable outside of the context of the parent workflow. In the case they're run on their own,...