Furentsu pushed 1207 commits to master Furentsu/nf-core_modules

October 24, 2024 12:59pm

• Changed tag from single quotes to double quotes (#5531) Co-authored-by: Simon Pearce <[email protected]... acb0880
• [TYPO] Align commas (#5380) Align commas Co-authored-by: Simon Pearce <[email protected]> 5c82ca0
• GFFREAD: updated to 0.12.7, added meta and fasta input/output (#5448) * GFFREAD: updated to 0.12.7, added meta and f... 6c996d7
• re delete gatk4/bedtointervallist from pytest_modules.yml after it was added again (see #5251) (#5328) delete gatk4/... bbbbc81
• Update mosdepth to 0.3.8 (#5538) * Update mosdepth to 0.3.8 * Updating main.nf.test.snap e0616fb
• migrating flash to nf-test (#5470) * migrating flash to nf-test * removing args2 from main.nf * Update nextflow.co... 4db86a0
• add riboseq transcriptome bam to test config (#5537) * add ribo-seq transcriptome bam * remove extra line 0171120
• Update nanoplot/main.nf (#5460) Update main.nf Updated the "def input_file" section so that it not only takes fastq... 3135090
• Added repeatmodeler/repeatmodeler (#5536) * repeatmodeler/repeatmodeler * Demoted to process_medium * Update modul... 84efd2f
• Blastdbcmd new module (#5482) * starting blastdbcmd * carry on * Making it work with simple entry version * Upgra... b00ebb6
• Try alternative strategy for extracting tags (#4928) * Try alternative strategy for extracting tags * Add check to ... ac58a02
• add updates in nf-core/cellrangermulti module script (#5542) * add updates in nf-core module script * update module... 5f12fc2
• Update GitHub Actions (major) (#5551) Update GitHub Actions Co-authored-by: renovate[bot] <29139614+renovate[bot]@u... 1c60a52
• new module lofreq/alnqual (#5420) * new module lofreq/alnqual * new module lofreq/alnqual * check for existence of... ce85357
• new grea module (#5528) * new grea module * lower permutation for grea test * remove whitespaces * solve lint is... 71b1180
• update bedgovcf to v0.1.1 (#5553) 71a9606
• handle multiple DOIs (#5556) * handle multiple DOIs * handle dois vs resolvers + comments * Update subworkflows/nf... 92de218
• Add nf tests for the picard bam qc subworkflow (#4507) * Add test for bam_qc_picard subworkflow * Removed bam_qc_pi... 02c99ef
• nf-test zip (#4468) * Add nf-test * Remove pytest * Remove comment Co-authored-by: Sateesh_Peri <33637490+sateesh... 3f6c1f1
• Bump shinyngs (#5543) * Bump shinyngs * Fix containers * Migrate shinyngs/app to nf-test * Bump versions again *... 2876a02
• and 1187 more ...

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