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AnaMVasilcoiu/SegTHOR_ai4mi

nordinbelkacemi opened a pull request on AnaMVasilcoiu/SegTHOR_ai4mi
Focal loss
nordinbelkacemi pushed 2 commits to focal-loss AnaMVasilcoiu/SegTHOR_ai4mi
  • Update readme.md: zip file 61a4201
  • Merge branch 'master' of https://github.com/HKervadec/ai4mi_project into focal-loss c90d227

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nordinbelkacemi pushed 1 commit to focal-loss AnaMVasilcoiu/SegTHOR_ai4mi
  • fixed kwarg in loss focal loss function initialization a37a56b

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BatuHelva pushed 1 commit to master AnaMVasilcoiu/SegTHOR_ai4mi
  • updated stitch for postprocessing 8ee5170

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BatuHelva pushed 14 commits to master AnaMVasilcoiu/SegTHOR_ai4mi
  • added eval metrics added eval metrics from metrics branch for logging 6461e82
  • update to slicer to use corrected data 2a6b281
  • changed env setup of job file 1c0f518
  • adjusted runtime of job file 8a1a888
  • Update loss_experiments.job c903e22
  • Update loss_experiments.job dae83aa
  • modified slice_segthor for corrected data aae3f99
  • debugging slow training v1 98aa072
  • debugging slow training v2 1821b31
  • denseCRF dense crf added to stitch.py as post processing when creating the volume 973d004
  • disabled logging to speed up training 83c98e5
  • added post_processing flag to args 80b68fc
  • postprocessing modifications bcd0804
  • Merge branch 'loss_functions' 51c5e29

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BatuHelva pushed 1 commit to loss_functions AnaMVasilcoiu/SegTHOR_ai4mi
  • postprocessing modifications bcd0804

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k-maradiaga pushed 4 commits to master AnaMVasilcoiu/SegTHOR_ai4mi
  • Added Metrics to utils.py and adjusted main.py accordingly. c067595
  • FIxed some metrics 6f1d847
  • Added 3dMetrics calculation script 135116d
  • Merge pull request #4 from AnaMVasilcoiu/metrics Metrics 0a47750

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k-maradiaga pushed 1 commit to metrics AnaMVasilcoiu/SegTHOR_ai4mi
  • Added 3dMetrics calculation script 135116d

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nordinbelkacemi pushed 15 commits to master AnaMVasilcoiu/SegTHOR_ai4mi
  • plotting now in main 5bbed31
  • focal loss experiments e68d04a
  • plotting file for comparison between experiments and baseline 96ae4fb
  • merge e6287f3
  • Merge branch 'master' of github.com:AnaMVasilcoiu/SegTHOR_ai4mi into focal-loss 2eff840
  • changed all job files to 100 epochs e47fc84
  • main file bad merge fix 427ee22
  • dont_save_predictions argument (typo) fix 5201d4d
  • removed unnecessary file 1228ff9
  • changed time required for running jobs and added separate weighted focal loss jobs 6e3175a
  • fixed some typos 6801e3f
  • arg typo fix (weights -> focal_loss_weights) 042ea48
  • Merge branch 'master' of github.com:AnaMVasilcoiu/SegTHOR_ai4mi into focal-loss 9477926
  • small typo fixes and file deletions a2edbc8
  • Merge pull request #3 from AnaMVasilcoiu/focal-loss Focal loss 4043c0c

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nordinbelkacemi closed a pull request on AnaMVasilcoiu/SegTHOR_ai4mi
Focal loss
- Added focal loss, with job files for running different focal loss experiments - Changed saving structure: saves in the given directory, and within that, in a folder named with a timestamp - Som...
nordinbelkacemi pushed 8 commits to focal-loss AnaMVasilcoiu/SegTHOR_ai4mi
  • Add data instructions readme 7c55d1d
  • Fix intensity-based augmentation script 350226c
  • Revert test names 0f3d963
  • Minor fix intensity based augmentations 62d312b
  • Files for running experiments over baseline fcc741f
  • Fixed plots with background class too 10400e9
  • Merge branch 'master' of github.com:AnaMVasilcoiu/SegTHOR_ai4mi into focal-loss 9477926
  • small typo fixes and file deletions a2edbc8

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