Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
dweindl opened an issue on AMICI-dev/AMICI
Incorrect sensitivities when a sigmay expression depends on a different observable
If `sigmay[i]` depends on `y[j]`, with i !=j, then sensitivities will be incorrect. We need to raise an error during import or support that.
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FFroehlich pushed 8 commits to jax_export AMICI-dev/AMICI
- GHA: Ignore python3.13 failures for now (#2557) Until all dependencies work with Python3.13. pyarrow wheels are stil... 40b496f
- Fix dangling pointer in SolverTest.SettersGettersWithSetup (#2556) Fixes a dangling pointer issue in SolverTest.Sett... fbe3840
- clang-format 19.1.1 updates a82f6d4
- Fix crashes when errors occur at output timepoints (#2555) Fixes a bug that lead to program termination if a root-af... 9f56266
- Update references (#2518) * BarthelKun2024 * ArmisteadHoe2024 7f863cf
- Update changelog, bump version 8e9f93a
- Merge pull request #2554 from dweindl/release_0.27.0 Release 0.27.0 638c3ee
- Merge branch 'develop' into jax_export 7c3aef9
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FFroehlich pushed 1 commit to jax_export AMICI-dev/AMICI
- simply tests + add support for non-dynamic simulation in jax 82a01ba
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FFroehlich pushed 1 commit to jax_export AMICI-dev/AMICI
- add support for heavyside functions 7faae32
dweindl opened an issue on AMICI-dev/AMICI
Add missing simulation status codes
Add missing simulation status codes to string mapping: -42 -43 -25
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FFroehlich pushed 2 commits to jax_export AMICI-dev/AMICI
dweindl created a comment on an issue on AMICI-dev/AMICI
https://github.com/AMICI-dev/AMICI/releases/tag/v0.27.0 has some improvements with regards to potentially interfering systems packages. It might be worth retrying with the most recent version. Clos...
dweindl closed an issue on AMICI-dev/AMICI
Segmentation fault when importing amici on Mac
Hi, I tried to install AMICI in a conda environment on my Mac. I followed the [installation instructions](https://amici.readthedocs.io/en/latest/python_installation.html), and I installed all of...
dweindl created a comment on an issue on AMICI-dev/AMICI
Fixed in https://github.com/AMICI-dev/AMICI/releases/tag/v0.27.0
dweindl closed an issue on AMICI-dev/AMICI
Deprecation warnings in `python/examples/example_jax/ExampleJax.ipynb`
``` [/tmp/ipykernel_2317/4172501162.py:12](https://hub.binder.curvenote.dev/tmp/ipykernel_2317/4172501162.py#line=11): DeprecationWarning: Accessing `petab.LIN` is deprecated and will be removed i...
dweindl created a comment on an issue on AMICI-dev/AMICI
Fixed in https://github.com/AMICI-dev/AMICI/releases/tag/v0.27.0
dweindl closed an issue on AMICI-dev/AMICI
`ValueError: result_shape_dtypes cannot specify 64-bit types when `jax_enable_x64` is disabled` in `python/examples/example_jax/ExampleJax.ipynb`
Notebook tests are currently failing, e.g. https://github.com/AMICI-dev/AMICI/actions/runs/11212778064/job/31164450397
dweindl created a tag on AMICI-dev/AMICI
v0.27.0 - Advanced Multilanguage Interface to CVODES and IDAS
dweindl published a release on AMICI-dev/AMICI
AMICI v0.27.0
This release comes with an **updated version of the SUNDIALS package (7.1.1)** (https://github.com/AMICI-dev/AMICI/pull/2513). For C++ users of some of AMICI's internal RAII classes, this may in...
dweindl pushed 2 commits to develop AMICI-dev/AMICI
dweindl closed an issue on AMICI-dev/AMICI
Assertion error in ForwardProblem::getSimulationStateTimepoint
I got the following assertion error in `ForwardProblem::getSimulationStateTimepoint` when simulating [Weber_BMC2015](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/master/Be...
dweindl closed an issue on AMICI-dev/AMICI
Sundials warnings not showing since 7.1.1 upgrade
Sundials warnings got lost since sundials 7 upgrade (#2513). (Things like `Internal t = 2.13327 and h = 1.33227e-16 are such that t + h = t on the next step.`). This is because there are now sep...