Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
github-merge-queue[bot] created a branch on AMICI-dev/AMICI
gh-readonly-queue/develop/pr-2552-8253a97d413cbbcfec335fb50fd1355107804e9e - Advanced Multilanguage Interface to CVODES and IDAS
sonarcloud[bot] created a comment on a pull request on AMICI-dev/AMICI
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FFroehlich pushed 1 commit to fix_jax_notebook AMICI-dev/AMICI
- Apply suggestions from code review Co-authored-by: Daniel Weindl <[email protected]> a5d6280
sonarcloud[bot] created a comment on a pull request on AMICI-dev/AMICI
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dweindl created a review comment on a pull request on AMICI-dev/AMICI
```suggestion "As last step, we implement the parameter transformation in jax. This effectively just extracts parameter scales from the petab problem, implements rescaling in jax and then pass...
dweindl created a review comment on a pull request on AMICI-dev/AMICI
```suggestion "Now we can use this base function to create two separate functions that return the log-likelihood (`llh`) and a tuple with log-likelihood and its gradient (`sllh`). Both functio...
dweindl created a review comment on a pull request on AMICI-dev/AMICI
```suggestion "For full jax support, we would have to implement a new [primitive](https://jax.readthedocs.io/en/latest/notebooks/How_JAX_primitives_work.html), which would require quite a bit ...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
## [Codecov](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2552?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev...
FFroehlich created a branch on AMICI-dev/AMICI
fix_jax_notebook - Advanced Multilanguage Interface to CVODES and IDAS
dweindl closed a pull request on AMICI-dev/AMICI
Fix capturing SUNDIALS warnings after 7.1.1 upgrade
Disable SUNDIALS's warning-handling through `SUNLogger`. Instead pipe everything both errors and warnings through the provided`SUNErrHandlerFn`. For details, see #2550. Fixes #2550. This a...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
## [Codecov](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2551?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev...
dweindl opened a draft pull request on AMICI-dev/AMICI
Fix capturing SUNDIALS warnings after 7.1.1 upgrade
Disable SUNDIALS's warning-handling through `SUNLogger`. Instead pipe everything both errors and warnings through the provided`SUNErrHandlerFn`. For details, see #2550. Fixes #2550.
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Fix `_collect_heaviside_roots` for `sympy.Heaviside` arguments Since https://github.com/AMICI-dev/AMICI/commit/b7a3e... c8778e5
dweindl closed a pull request on AMICI-dev/AMICI
Fix `_collect_heaviside_roots` for `sympy.Heaviside` arguments
Since https://github.com/AMICI-dev/AMICI/commit/b7a3e9133fd53c36daa6df6a71c580f5ff1eead2, if dxdt was a sympy.Heaviside, it wasn't correctly processed, because only its arguments were checked. That...
dweindl created a comment on an issue on AMICI-dev/AMICI
Oh well, the much simpler solution would be just slightly modifying `cvProcessError` / `IDAProcessError` to channel the warnings into the error handler instead of the logger.
dweindl opened an issue on AMICI-dev/AMICI
Sundials warnings not showing since 7.1.1 upgrade
Sundials warnings got lost since sundials 7 upgrade (#2513). (Things like `Internal t = 2.13327 and h = 1.33227e-16 are such that t + h = t on the next step.`). This is because there are now sep...
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- CMake: Don't attempt to create alias target if target of the same name already exists Fixes #2546. 9f821d9
dweindl closed a pull request on AMICI-dev/AMICI
CMake: Don't attempt to create alias target if target of the same name already exists
Fixes #2546.
dweindl created a comment on an issue on AMICI-dev/AMICI
> So for [Beer_MolBioSystems2014](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Beer_MolBioSystems2014) the problem is: > > https://github.c...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
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codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
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dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Fix pysb branch (#2548) Previous branch no longer exists. Now on master (https://github.com/pysb/pysb/commit/8be8263... d4bb0ce