Ecosyste.ms: Timeline
Browse the timeline of events for every public repo on GitHub. Data updated hourly from GH Archive.
dweindl closed a pull request on AMICI-dev/AMICI
CMake: Don't attempt to create alias target if target of the same name already exists
Fixes #2546.
dweindl created a comment on an issue on AMICI-dev/AMICI
> So for [Beer_MolBioSystems2014](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Beer_MolBioSystems2014) the problem is: > > https://github.c...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
## [Codecov](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2549?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
## [Codecov](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2547?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev...
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Fix pysb branch (#2548) Previous branch no longer exists. Now on master (https://github.com/pysb/pysb/commit/8be8263... d4bb0ce
dweindl closed a pull request on AMICI-dev/AMICI
Fix pysb branch
Previous branch no longer exists. Now on master (https://github.com/pysb/pysb/commit/8be8263d32e33bff6c4e92c927f4ba85590dc20f).
dweindl opened a pull request on AMICI-dev/AMICI
Fix `_collect_heaviside_roots` for `sympy.Heaviside` arguments
Previously, if dxdt was a sympy.Heaviside, it wasn't correctly processed, because only its arguments were checked. That means, root-finding would not be enabled for this discontinuity. This woul...
codecov[bot] created a comment on a pull request on AMICI-dev/AMICI
## [Codecov](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2548?dropdown=coverage&src=pr&el=h1&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev...
dweindl created a comment on an issue on AMICI-dev/AMICI
> Similarly for [Alkan_SciSignal2018](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Alkan_SciSignal2018), only that there the piecewise occurs ...
dweindl opened a pull request on AMICI-dev/AMICI
CMake: Don't attempt to create alias target if target of the same name already exists
Fixes #2546.
dweindl created a comment on an issue on AMICI-dev/AMICI
The problem here is just creating the ALIAS target `model`. If the actual model is already called `model`, we can just skip that step. I can fix that.
dweindl created a comment on an issue on AMICI-dev/AMICI
> What evidence do we have that models were imported correctly? Does the failed processing lead to an error? Amici-0.11.28-generated model code from about 2 years ago that has: ```c void root_...
FFroehlich created a comment on an issue on AMICI-dev/AMICI
What evidence do we have that models were imported correctly? Does the failed processing lead to an error?
FFroehlich opened an issue on AMICI-dev/AMICI
model name "model" leads to cmake failures
model name "model" is default for pysb, leads to clash in cmake target names (see error below). Not sure whether we should not permit models named "model" or add a prefix to the cmake target. ...
dweindl created a comment on an issue on AMICI-dev/AMICI
So for [Beer_MolBioSystems2014](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Beer_MolBioSystems2014) the problem is: https://github.com/AMI...
dweindl created a comment on an issue on AMICI-dev/AMICI
Similarly for [Alkan_SciSignal2018](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Alkan_SciSignal2018), only that there the piecewise occurs in...
dweindl opened an issue on AMICI-dev/AMICI
SBML import: Incorrect processing of piecewise/Heaviside function
[Beer_MolBioSystems2014](https://github.com/Benchmarking-Initiative/Benchmark-Models-PEtab/tree/v2024.10.15/Benchmark-Models/Beer_MolBioSystems2014) has an assignment rule containing `piecewise`. T...
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Update benchmark problem name Fiedler_BMC->Fiedler_BMCSystBiol2016 2c957c8
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Doc: Add missing command in python_installation.rst (#2544) 09755d4
dweindl pushed 1 commit to develop AMICI-dev/AMICI
- Update CMake export config (#2540) * We don't need to find SuiteSparse - sundials takes care of that * Fixes some i... ee2e0d2
dweindl closed a pull request on AMICI-dev/AMICI
Update CMake export config
* We don't need to find SuiteSparse - sundials takes care of that * Fixes some issues when consuming the amici-exported CMake config * Set CMAKE_PREFIX_PATH when configuring models * Install sy...